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INTS5 (integrator complex subunit 5)

Identity

Alias (NCBI)INT5
KIAA1698
HGNC (Hugo) INTS5
HGNC Alias symbINT5
HGNC Previous nameKIAA1698
HGNC Previous nameKIAA1698
LocusID (NCBI) 80789
Atlas_Id 64629
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62646848 and ends at 62653302 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
INTS5 (11q12.3) / CECR5 (22q11.1)INTS5 (11q12.3) / INTS5 (11q12.3)INTS5 (11q12.3) / SYT12 (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)INTS5   29352
Cards
Entrez_Gene (NCBI)INTS5    integrator complex subunit 5
AliasesINT5; KIAA1698
GeneCards (Weizmann)INTS5
Ensembl hg19 (Hinxton)ENSG00000185085 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185085 [Gene_View]  ENSG00000185085 [Sequence]  chr11:62646848-62653302 [Contig_View]  INTS5 [Vega]
ICGC DataPortalENSG00000185085
TCGA cBioPortalINTS5
AceView (NCBI)INTS5
Genatlas (Paris)INTS5
SOURCE (Princeton)INTS5
Genetics Home Reference (NIH)INTS5
Genomic and cartography
GoldenPath hg38 (UCSC)INTS5  -     chr11:62646848-62653302 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INTS5  -     11q12.3   [Description]    (hg19-Feb_2009)
GoldenPathINTS5 - 11q12.3 [CytoView hg19]  INTS5 - 11q12.3 [CytoView hg38]
ImmunoBaseENSG00000185085
Genome Data Viewer NCBIINTS5 [Mapview hg19]  
OMIM611349   
Gene and transcription
Genbank (Entrez)AB051485 AK074261 AK123587 BC028025 BC060841
RefSeq transcript (Entrez)NM_030628
Consensus coding sequences : CCDS (NCBI)INTS5
Gene ExpressionINTS5 [ NCBI-GEO ]   INTS5 [ EBI - ARRAY_EXPRESS ]   INTS5 [ SEEK ]   INTS5 [ MEM ]
Gene Expression Viewer (FireBrowse)INTS5 [ Firebrowse - Broad ]
GenevisibleExpression of INTS5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80789
GTEX Portal (Tissue expression)INTS5
Human Protein AtlasENSG00000185085-INTS5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9B9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9B9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9B9
PhosPhoSitePlusQ6P9B9
Domains : Interpro (EBI)INTS5    INTS5_C    INTS5_N   
Domain families : Pfam (Sanger)INTS5_C (PF14838)    INTS5_N (PF14837)   
Domain families : Pfam (NCBI)pfam14838    pfam14837   
Conserved Domain (NCBI)INTS5
SuperfamilyQ6P9B9
AlphaFold pdb e-kbQ6P9B9   
Human Protein Atlas [tissue]ENSG00000185085-INTS5 [tissue]
HPRD13883
Protein Interaction databases
DIP (DOE-UCLA)Q6P9B9
IntAct (EBI)Q6P9B9
BioGRIDINTS5
STRING (EMBL)INTS5
ZODIACINTS5
Ontologies - Pathways
QuickGOQ6P9B9
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  membrane  integral component of membrane  snRNA processing  nuclear membrane  integrator complex  integrator complex  snRNA 3'-end processing  snRNA transcription by RNA polymerase II  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  membrane  integral component of membrane  snRNA processing  nuclear membrane  integrator complex  integrator complex  snRNA 3'-end processing  snRNA transcription by RNA polymerase II  
NDEx NetworkINTS5
Atlas of Cancer Signalling NetworkINTS5
Wikipedia pathwaysINTS5
Orthology - Evolution
OrthoDB80789
GeneTree (enSembl)ENSG00000185085
Phylogenetic Trees/Animal Genes : TreeFamINTS5
Homologs : HomoloGeneINTS5
Homology/Alignments : Family Browser (UCSC)INTS5
Gene fusions - Rearrangements
Fusion : QuiverINTS5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINTS5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INTS5
dbVarINTS5
ClinVarINTS5
MonarchINTS5
1000_GenomesINTS5 
Exome Variant ServerINTS5
GNOMAD BrowserENSG00000185085
Varsome BrowserINTS5
ACMGINTS5 variants
VarityQ6P9B9
Genomic Variants (DGV)INTS5 [DGVbeta]
DECIPHERINTS5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINTS5 
Mutations
ICGC Data PortalINTS5 
TCGA Data PortalINTS5 
Broad Tumor PortalINTS5
OASIS PortalINTS5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINTS5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DINTS5
Mutations and Diseases : HGMDINTS5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaINTS5
DgiDB (Drug Gene Interaction Database)INTS5
DoCM (Curated mutations)INTS5
CIViC (Clinical Interpretations of Variants in Cancer)INTS5
Cancer3DINTS5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611349   
Orphanet
DisGeNETINTS5
MedgenINTS5
Genetic Testing Registry INTS5
NextProtQ6P9B9 [Medical]
GENETestsINTS5
Target ValidationINTS5
Huge Navigator INTS5 [HugePedia]
ClinGenINTS5
Clinical trials, drugs, therapy
MyCancerGenomeINTS5
Protein Interactions : CTDINTS5
Pharm GKB GenePA142671596
PharosQ6P9B9
Clinical trialINTS5
Miscellaneous
canSAR (ICR)INTS5
HarmonizomeINTS5
DataMed IndexINTS5
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXINTS5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:53:51 CEST 2021

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