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INTS5 (integrator complex subunit 5)

Identity

Alias_namesKIAA1698
KIAA1698
Alias_symbol (synonym)INT5
Other alias
HGNC (Hugo) INTS5
LocusID (NCBI) 80789
Atlas_Id 64629
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62646848 and ends at 62653302 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
INTS5 (11q12.3) / CECR5 (22q11.1)INTS5 (11q12.3) / INTS5 (11q12.3)INTS5 (11q12.3) / SYT12 (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INTS5   29352
Cards
Entrez_Gene (NCBI)INTS5  80789  integrator complex subunit 5
AliasesINT5; KIAA1698
GeneCards (Weizmann)INTS5
Ensembl hg19 (Hinxton)ENSG00000185085 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185085 [Gene_View]  chr11:62646848-62653302 [Contig_View]  INTS5 [Vega]
ICGC DataPortalENSG00000185085
TCGA cBioPortalINTS5
AceView (NCBI)INTS5
Genatlas (Paris)INTS5
WikiGenes80789
SOURCE (Princeton)INTS5
Genetics Home Reference (NIH)INTS5
Genomic and cartography
GoldenPath hg38 (UCSC)INTS5  -     chr11:62646848-62653302 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INTS5  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblINTS5 - 11q12.3 [CytoView hg19]  INTS5 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBIINTS5 [Mapview hg19]  INTS5 [Mapview hg38]
OMIM611349   
Gene and transcription
Genbank (Entrez)AB051485 AK074261 AK123587 BC028025 BC060841
RefSeq transcript (Entrez)NM_030628
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INTS5
Cluster EST : UnigeneHs.458390 [ NCBI ]
CGAP (NCI)Hs.458390
Alternative Splicing GalleryENSG00000185085
Gene ExpressionINTS5 [ NCBI-GEO ]   INTS5 [ EBI - ARRAY_EXPRESS ]   INTS5 [ SEEK ]   INTS5 [ MEM ]
Gene Expression Viewer (FireBrowse)INTS5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80789
GTEX Portal (Tissue expression)INTS5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9B9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9B9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9B9
Splice isoforms : SwissVarQ6P9B9
PhosPhoSitePlusQ6P9B9
Domains : Interpro (EBI)INTS5_C    INTS5_N   
Domain families : Pfam (Sanger)INTS5_C (PF14838)    INTS5_N (PF14837)   
Domain families : Pfam (NCBI)pfam14838    pfam14837   
Conserved Domain (NCBI)INTS5
DMDM Disease mutations80789
Blocks (Seattle)INTS5
SuperfamilyQ6P9B9
Human Protein AtlasENSG00000185085
Peptide AtlasQ6P9B9
HPRD13883
IPIIPI00304676   IPI00980812   
Protein Interaction databases
DIP (DOE-UCLA)Q6P9B9
IntAct (EBI)Q6P9B9
FunCoupENSG00000185085
BioGRIDINTS5
STRING (EMBL)INTS5
ZODIACINTS5
Ontologies - Pathways
QuickGOQ6P9B9
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  membrane  integral component of membrane  snRNA processing  nuclear membrane  integrator complex  snRNA transcription from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  membrane  integral component of membrane  snRNA processing  nuclear membrane  integrator complex  snRNA transcription from RNA polymerase II promoter  
NDEx NetworkINTS5
Atlas of Cancer Signalling NetworkINTS5
Wikipedia pathwaysINTS5
Orthology - Evolution
OrthoDB80789
GeneTree (enSembl)ENSG00000185085
Phylogenetic Trees/Animal Genes : TreeFamINTS5
HOVERGENQ6P9B9
HOGENOMQ6P9B9
Homologs : HomoloGeneINTS5
Homology/Alignments : Family Browser (UCSC)INTS5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINTS5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INTS5
dbVarINTS5
ClinVarINTS5
1000_GenomesINTS5 
Exome Variant ServerINTS5
ExAC (Exome Aggregation Consortium)INTS5 (select the gene name)
Genetic variants : HAPMAP80789
Genomic Variants (DGV)INTS5 [DGVbeta]
DECIPHERINTS5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINTS5 
Mutations
ICGC Data PortalINTS5 
TCGA Data PortalINTS5 
Broad Tumor PortalINTS5
OASIS PortalINTS5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINTS5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINTS5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INTS5
DgiDB (Drug Gene Interaction Database)INTS5
DoCM (Curated mutations)INTS5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INTS5 (select a term)
intoGenINTS5
Cancer3DINTS5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611349   
Orphanet
MedgenINTS5
Genetic Testing Registry INTS5
NextProtQ6P9B9 [Medical]
TSGene80789
GENETestsINTS5
Target ValidationINTS5
Huge Navigator INTS5 [HugePedia]
snp3D : Map Gene to Disease80789
BioCentury BCIQINTS5
ClinGenINTS5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80789
Chemical/Pharm GKB GenePA142671596
Clinical trialINTS5
Miscellaneous
canSAR (ICR)INTS5 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINTS5
EVEXINTS5
GoPubMedINTS5
iHOPINTS5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:32 CEST 2017

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