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INTS7 (integrator complex subunit 7)

Identity

Alias_namesC1orf73
chromosome 1 open reading frame 73
Alias_symbol (synonym)DKFZP434B168
INT7
Other alias
HGNC (Hugo) INTS7
LocusID (NCBI) 25896
Atlas_Id 64631
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 211940399 and ends at 212035660 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NEK7 (1q31.3) / INTS7 (1q32.3)WDR74 (11q12.3) / INTS7 (1q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INTS7   24484
Cards
Entrez_Gene (NCBI)INTS7  25896  integrator complex subunit 7
AliasesC1orf73; INT7
GeneCards (Weizmann)INTS7
Ensembl hg19 (Hinxton)ENSG00000143493 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143493 [Gene_View]  chr1:211940399-212035660 [Contig_View]  INTS7 [Vega]
ICGC DataPortalENSG00000143493
TCGA cBioPortalINTS7
AceView (NCBI)INTS7
Genatlas (Paris)INTS7
WikiGenes25896
SOURCE (Princeton)INTS7
Genetics Home Reference (NIH)INTS7
Genomic and cartography
GoldenPath hg38 (UCSC)INTS7  -     chr1:211940399-212035660 -  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INTS7  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblINTS7 - 1q32.3 [CytoView hg19]  INTS7 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBIINTS7 [Mapview hg19]  INTS7 [Mapview hg38]
OMIM611350   
Gene and transcription
Genbank (Entrez)AK001363 AK001598 AK022509 AK022589 AK297225
RefSeq transcript (Entrez)NM_001199809 NM_001199811 NM_001199812 NM_015434
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INTS7
Cluster EST : UnigeneHs.369285 [ NCBI ]
CGAP (NCI)Hs.369285
Alternative Splicing GalleryENSG00000143493
Gene ExpressionINTS7 [ NCBI-GEO ]   INTS7 [ EBI - ARRAY_EXPRESS ]   INTS7 [ SEEK ]   INTS7 [ MEM ]
Gene Expression Viewer (FireBrowse)INTS7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25896
GTEX Portal (Tissue expression)INTS7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVH2
Splice isoforms : SwissVarQ9NVH2
PhosPhoSitePlusQ9NVH2
Domains : Interpro (EBI)ARM-like    ARM-type_fold    INTS7   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)INTS7
DMDM Disease mutations25896
Blocks (Seattle)INTS7
SuperfamilyQ9NVH2
Human Protein AtlasENSG00000143493
Peptide AtlasQ9NVH2
HPRD08522
IPIIPI00743871   IPI00645022   IPI00645488   IPI00909591   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVH2
IntAct (EBI)Q9NVH2
FunCoupENSG00000143493
BioGRIDINTS7
STRING (EMBL)INTS7
ZODIACINTS7
Ontologies - Pathways
QuickGOQ9NVH2
Ontology : AmiGODNA damage checkpoint  protein binding  nucleus  nucleoplasm  chromosome  cytosol  snRNA processing  nuclear speck  integrator complex  snRNA 3'-end processing  snRNA transcription from RNA polymerase II promoter  cellular response to ionizing radiation  
Ontology : EGO-EBIDNA damage checkpoint  protein binding  nucleus  nucleoplasm  chromosome  cytosol  snRNA processing  nuclear speck  integrator complex  snRNA 3'-end processing  snRNA transcription from RNA polymerase II promoter  cellular response to ionizing radiation  
NDEx NetworkINTS7
Atlas of Cancer Signalling NetworkINTS7
Wikipedia pathwaysINTS7
Orthology - Evolution
OrthoDB25896
GeneTree (enSembl)ENSG00000143493
Phylogenetic Trees/Animal Genes : TreeFamINTS7
HOVERGENQ9NVH2
HOGENOMQ9NVH2
Homologs : HomoloGeneINTS7
Homology/Alignments : Family Browser (UCSC)INTS7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINTS7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INTS7
dbVarINTS7
ClinVarINTS7
1000_GenomesINTS7 
Exome Variant ServerINTS7
ExAC (Exome Aggregation Consortium)INTS7 (select the gene name)
Genetic variants : HAPMAP25896
Genomic Variants (DGV)INTS7 [DGVbeta]
DECIPHERINTS7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINTS7 
Mutations
ICGC Data PortalINTS7 
TCGA Data PortalINTS7 
Broad Tumor PortalINTS7
OASIS PortalINTS7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINTS7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINTS7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INTS7
DgiDB (Drug Gene Interaction Database)INTS7
DoCM (Curated mutations)INTS7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INTS7 (select a term)
intoGenINTS7
Cancer3DINTS7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611350   
Orphanet
MedgenINTS7
Genetic Testing Registry INTS7
NextProtQ9NVH2 [Medical]
TSGene25896
GENETestsINTS7
Target ValidationINTS7
Huge Navigator INTS7 [HugePedia]
snp3D : Map Gene to Disease25896
BioCentury BCIQINTS7
ClinGenINTS7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25896
Chemical/Pharm GKB GenePA142672522
Clinical trialINTS7
Miscellaneous
canSAR (ICR)INTS7 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINTS7
EVEXINTS7
GoPubMedINTS7
iHOPINTS7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:15 CEST 2017

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