Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

INTS9 (integrator complex subunit 9)

Identity

Alias_symbol (synonym)FLJ10871
CPSF2L
RC-74
Other aliasINT9
RC74
HGNC (Hugo) INTS9
LocusID (NCBI) 55756
Atlas_Id 40588
Location 8p21.1  [Link to chromosome band 8p21]
Location_base_pair Starts at 28767658 and ends at 28890181 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FBXO11 (2p16.3) / INTS9 (8p21.1)FDFT1 (8p23.1) / INTS9 (8p21.1)GNB3 (12p13.31) / INTS9 (8p21.1)
INTS9 (8p21.1) / AC130352.1 ()INTS9 (8p21.1) / CDK16 (Xp11.23)INTS9 (8p21.1) / GNB3 (12p13.31)
INTS9 (8p21.1) / INTS9 (8p21.1)FBXO11 2p16.3 / INTS9 8p21.1FDFT1 8p23.1 / INTS9 8p21.1
INTS9 8p21.1 AC130352.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INTS9   25592
Cards
Entrez_Gene (NCBI)INTS9  55756  integrator complex subunit 9
AliasesCPSF2L; INT9; RC74
GeneCards (Weizmann)INTS9
Ensembl hg19 (Hinxton)ENSG00000104299 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104299 [Gene_View]  chr8:28767658-28890181 [Contig_View]  INTS9 [Vega]
ICGC DataPortalENSG00000104299
TCGA cBioPortalINTS9
AceView (NCBI)INTS9
Genatlas (Paris)INTS9
WikiGenes55756
SOURCE (Princeton)INTS9
Genetics Home Reference (NIH)INTS9
Genomic and cartography
GoldenPath hg38 (UCSC)INTS9  -     chr8:28767658-28890181 -  8p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INTS9  -     8p21.1   [Description]    (hg19-Feb_2009)
EnsemblINTS9 - 8p21.1 [CytoView hg19]  INTS9 - 8p21.1 [CytoView hg38]
Mapping of homologs : NCBIINTS9 [Mapview hg19]  INTS9 [Mapview hg38]
OMIM611352   
Gene and transcription
Genbank (Entrez)AA825242 AK001733 AK225072 AK225530 AK295977
RefSeq transcript (Entrez)NM_001145159 NM_001172562 NM_018250
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INTS9
Cluster EST : UnigeneHs.162397 [ NCBI ]
CGAP (NCI)Hs.162397
Alternative Splicing GalleryENSG00000104299
Gene ExpressionINTS9 [ NCBI-GEO ]   INTS9 [ EBI - ARRAY_EXPRESS ]   INTS9 [ SEEK ]   INTS9 [ MEM ]
Gene Expression Viewer (FireBrowse)INTS9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55756
GTEX Portal (Tissue expression)INTS9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV88   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NV88  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NV88
Splice isoforms : SwissVarQ9NV88
PhosPhoSitePlusQ9NV88
Domains : Interpro (EBI)Beta_Casp    Integrator_9su    Metallo-B-lactamas   
Domain families : Pfam (Sanger)Beta-Casp (PF10996)    Lactamase_B_6 (PF16661)   
Domain families : Pfam (NCBI)pfam10996    pfam16661   
Domain families : Smart (EMBL)Beta-Casp (SM01027)  
Conserved Domain (NCBI)INTS9
DMDM Disease mutations55756
Blocks (Seattle)INTS9
SuperfamilyQ9NV88
Human Protein AtlasENSG00000104299
Peptide AtlasQ9NV88
HPRD07706
IPIIPI00290514   IPI00942754   IPI00976472   IPI00871167   IPI01011387   IPI01013602   IPI00973818   IPI00974179   IPI00976000   IPI00979150   IPI00982071   IPI00981334   
Protein Interaction databases
DIP (DOE-UCLA)Q9NV88
IntAct (EBI)Q9NV88
FunCoupENSG00000104299
BioGRIDINTS9
STRING (EMBL)INTS9
ZODIACINTS9
Ontologies - Pathways
QuickGOQ9NV88
Ontology : AmiGOprotein binding  nucleoplasm  nucleoplasm  cytosol  snRNA processing  integrator complex  snRNA transcription from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleoplasm  cytosol  snRNA processing  integrator complex  snRNA transcription from RNA polymerase II promoter  
NDEx NetworkINTS9
Atlas of Cancer Signalling NetworkINTS9
Wikipedia pathwaysINTS9
Orthology - Evolution
OrthoDB55756
GeneTree (enSembl)ENSG00000104299
Phylogenetic Trees/Animal Genes : TreeFamINTS9
HOVERGENQ9NV88
HOGENOMQ9NV88
Homologs : HomoloGeneINTS9
Homology/Alignments : Family Browser (UCSC)INTS9
Gene fusions - Rearrangements
Fusion : MitelmanFBXO11/INTS9 [2p16.3/8p21.1]  [t(2;8)(p16;p21)]  
Fusion : MitelmanFDFT1/INTS9 [8p23.1/8p21.1]  [t(8;8)(p21;p23)]  
Fusion: TCGAFBXO11 2p16.3 INTS9 8p21.1 PRAD
Fusion: TCGAFDFT1 8p23.1 INTS9 8p21.1 BRCA
Fusion: TCGAINTS9 8p21.1 AC130352.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINTS9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INTS9
dbVarINTS9
ClinVarINTS9
1000_GenomesINTS9 
Exome Variant ServerINTS9
ExAC (Exome Aggregation Consortium)INTS9 (select the gene name)
Genetic variants : HAPMAP55756
Genomic Variants (DGV)INTS9 [DGVbeta]
DECIPHERINTS9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINTS9 
Mutations
ICGC Data PortalINTS9 
TCGA Data PortalINTS9 
Broad Tumor PortalINTS9
OASIS PortalINTS9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINTS9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINTS9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INTS9
DgiDB (Drug Gene Interaction Database)INTS9
DoCM (Curated mutations)INTS9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INTS9 (select a term)
intoGenINTS9
Cancer3DINTS9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611352   
Orphanet
MedgenINTS9
Genetic Testing Registry INTS9
NextProtQ9NV88 [Medical]
TSGene55756
GENETestsINTS9
Target ValidationINTS9
Huge Navigator INTS9 [HugePedia]
snp3D : Map Gene to Disease55756
BioCentury BCIQINTS9
ClinGenINTS9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55756
Chemical/Pharm GKB GenePA162392192
Clinical trialINTS9
Miscellaneous
canSAR (ICR)INTS9 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINTS9
EVEXINTS9
GoPubMedINTS9
iHOPINTS9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:13:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.