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IPCEF1 (interaction protein for cytohesin exchange factors 1)

Identity

Alias_symbol (synonym)PIP3-E
KIAA0403
Other alias
HGNC (Hugo) IPCEF1
LocusID (NCBI) 26034
Atlas_Id 64635
Location 6q25.2  [Link to chromosome band 6q25]
Location_base_pair Starts at 154154483 and ends at 154330081 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IPCEF1   21204
Cards
Entrez_Gene (NCBI)IPCEF1  26034  interaction protein for cytohesin exchange factors 1
AliasesPIP3-E
GeneCards (Weizmann)IPCEF1
Ensembl hg19 (Hinxton)ENSG00000074706 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074706 [Gene_View]  ENSG00000074706 [Sequence]  chr6:154154483-154330081 [Contig_View]  IPCEF1 [Vega]
ICGC DataPortalENSG00000074706
TCGA cBioPortalIPCEF1
AceView (NCBI)IPCEF1
Genatlas (Paris)IPCEF1
WikiGenes26034
SOURCE (Princeton)IPCEF1
Genetics Home Reference (NIH)IPCEF1
Genomic and cartography
GoldenPath hg38 (UCSC)IPCEF1  -     chr6:154154483-154330081 -  6q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IPCEF1  -     6q25.2   [Description]    (hg19-Feb_2009)
EnsemblIPCEF1 - 6q25.2 [CytoView hg19]  IPCEF1 - 6q25.2 [CytoView hg38]
Mapping of homologs : NCBIIPCEF1 [Mapview hg19]  IPCEF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB007863 AJ310566 AK093997 AK289917 BC105015
RefSeq transcript (Entrez)NM_001130699 NM_001130700 NM_015553
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IPCEF1
Cluster EST : UnigeneHs.146100 [ NCBI ]
CGAP (NCI)Hs.146100
Alternative Splicing GalleryENSG00000074706
Gene ExpressionIPCEF1 [ NCBI-GEO ]   IPCEF1 [ EBI - ARRAY_EXPRESS ]   IPCEF1 [ SEEK ]   IPCEF1 [ MEM ]
Gene Expression Viewer (FireBrowse)IPCEF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26034
GTEX Portal (Tissue expression)IPCEF1
Human Protein AtlasENSG00000074706-IPCEF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWN9
Splice isoforms : SwissVarQ8WWN9
PhosPhoSitePlusQ8WWN9
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)PH (PF00169)   
Domain families : Pfam (NCBI)pfam00169   
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)IPCEF1
DMDM Disease mutations26034
Blocks (Seattle)IPCEF1
PDB (SRS)5MR1   
PDB (PDBSum)5MR1   
PDB (IMB)5MR1   
PDB (RSDB)5MR1   
Structural Biology KnowledgeBase5MR1   
SCOP (Structural Classification of Proteins)5MR1   
CATH (Classification of proteins structures)5MR1   
SuperfamilyQ8WWN9
Human Protein Atlas [tissue]ENSG00000074706-IPCEF1 [tissue]
Peptide AtlasQ8WWN9
HPRD17851
IPIIPI00889750   IPI00103381   IPI00980565   IPI00979960   IPI00981220   IPI00977234   IPI00979432   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWN9
IntAct (EBI)Q8WWN9
FunCoupENSG00000074706
BioGRIDIPCEF1
STRING (EMBL)IPCEF1
ZODIACIPCEF1
Ontologies - Pathways
QuickGOQ8WWN9
Ontology : AmiGOperoxidase activity  oxygen transporter activity  cytoplasm  plasma membrane  response to oxidative stress  oxygen transport  cellular oxidant detoxification  
Ontology : EGO-EBIperoxidase activity  oxygen transporter activity  cytoplasm  plasma membrane  response to oxidative stress  oxygen transport  cellular oxidant detoxification  
NDEx NetworkIPCEF1
Atlas of Cancer Signalling NetworkIPCEF1
Wikipedia pathwaysIPCEF1
Orthology - Evolution
OrthoDB26034
GeneTree (enSembl)ENSG00000074706
Phylogenetic Trees/Animal Genes : TreeFamIPCEF1
HOVERGENQ8WWN9
HOGENOMQ8WWN9
Homologs : HomoloGeneIPCEF1
Homology/Alignments : Family Browser (UCSC)IPCEF1
Gene fusions - Rearrangements
Fusion : QuiverIPCEF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIPCEF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IPCEF1
dbVarIPCEF1
ClinVarIPCEF1
1000_GenomesIPCEF1 
Exome Variant ServerIPCEF1
ExAC (Exome Aggregation Consortium)ENSG00000074706
GNOMAD BrowserENSG00000074706
Varsome BrowserIPCEF1
Genetic variants : HAPMAP26034
Genomic Variants (DGV)IPCEF1 [DGVbeta]
DECIPHERIPCEF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIPCEF1 
Mutations
ICGC Data PortalIPCEF1 
TCGA Data PortalIPCEF1 
Broad Tumor PortalIPCEF1
OASIS PortalIPCEF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIPCEF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIPCEF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IPCEF1
DgiDB (Drug Gene Interaction Database)IPCEF1
DoCM (Curated mutations)IPCEF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IPCEF1 (select a term)
intoGenIPCEF1
Cancer3DIPCEF1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIPCEF1
MedgenIPCEF1
Genetic Testing Registry IPCEF1
NextProtQ8WWN9 [Medical]
TSGene26034
GENETestsIPCEF1
Target ValidationIPCEF1
Huge Navigator IPCEF1 [HugePedia]
snp3D : Map Gene to Disease26034
BioCentury BCIQIPCEF1
ClinGenIPCEF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26034
Chemical/Pharm GKB GenePA164721033
Clinical trialIPCEF1
Miscellaneous
canSAR (ICR)IPCEF1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIPCEF1
EVEXIPCEF1
GoPubMedIPCEF1
iHOPIPCEF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:50:03 CEST 2018

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