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IPO11 (importin 11)

Identity

Alias_symbol (synonym)RanBP11
Other alias
HGNC (Hugo) IPO11
LocusID (NCBI) 51194
Atlas_Id 47389
Location 5q12.1  [Link to chromosome band 5q12]
Location_base_pair Starts at 62418884 and ends at 62628589 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C5orf28 (5p12) / IPO11 (5q12.1)IPO11 (5q12.1) / KIAA0825 (5q15)IPO11 (5q12.1) / RFFL (17q12)
IPO11 (5q12.1) / SAP30BP (17q25.1)IPO11 (5q12.1) / TNFAIP8 (5q23.1)SH3TC2 (5q32) / IPO11 (5q12.1)
IPO11 5q12.1 / TNFAIP8 5q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IPO11   20628
Cards
Entrez_Gene (NCBI)IPO11  51194  importin 11
AliasesRanBP11
GeneCards (Weizmann)IPO11
Ensembl hg19 (Hinxton)ENSG00000086200 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000086200 [Gene_View]  chr5:62418884-62628589 [Contig_View]  IPO11 [Vega]
ICGC DataPortalENSG00000086200
TCGA cBioPortalIPO11
AceView (NCBI)IPO11
Genatlas (Paris)IPO11
WikiGenes51194
SOURCE (Princeton)IPO11
Genetics Home Reference (NIH)IPO11
Genomic and cartography
GoldenPath hg38 (UCSC)IPO11  -     chr5:62418884-62628589 +  5q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IPO11  -     5q12.1   [Description]    (hg19-Feb_2009)
EnsemblIPO11 - 5q12.1 [CytoView hg19]  IPO11 - 5q12.1 [CytoView hg38]
Mapping of homologs : NCBIIPO11 [Mapview hg19]  IPO11 [Mapview hg38]
OMIM610889   
Gene and transcription
Genbank (Entrez)AF111109 AK001696 AK023177 AK124969 AK302781
RefSeq transcript (Entrez)NM_001134779 NM_016338
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IPO11
Cluster EST : UnigeneHs.482269 [ NCBI ]
CGAP (NCI)Hs.482269
Alternative Splicing GalleryENSG00000086200
Gene ExpressionIPO11 [ NCBI-GEO ]   IPO11 [ EBI - ARRAY_EXPRESS ]   IPO11 [ SEEK ]   IPO11 [ MEM ]
Gene Expression Viewer (FireBrowse)IPO11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51194
GTEX Portal (Tissue expression)IPO11
Human Protein AtlasENSG00000086200-IPO11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UI26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UI26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UI26
Splice isoforms : SwissVarQ9UI26
PhosPhoSitePlusQ9UI26
Domaine pattern : Prosite (Expaxy)IMPORTIN_B_NT (PS50166)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Importin-beta_N   
Domain families : Pfam (Sanger)IBN_N (PF03810)   
Domain families : Pfam (NCBI)pfam03810   
Domain families : Smart (EMBL)IBN_N (SM00913)  
Conserved Domain (NCBI)IPO11
DMDM Disease mutations51194
Blocks (Seattle)IPO11
SuperfamilyQ9UI26
Human Protein Atlas [tissue]ENSG00000086200-IPO11 [tissue]
Peptide AtlasQ9UI26
HPRD10003
IPIIPI00301107   IPI00913938   IPI01012283   IPI00552710   IPI00917511   IPI00917353   IPI00965867   IPI00965368   IPI00965107   IPI01009690   
Protein Interaction databases
DIP (DOE-UCLA)Q9UI26
IntAct (EBI)Q9UI26
FunCoupENSG00000086200
BioGRIDIPO11
STRING (EMBL)IPO11
ZODIACIPO11
Ontologies - Pathways
QuickGOQ9UI26
Ontology : AmiGOfibrillar center  protein binding  nucleus  cytoplasm  ribosomal protein import into nucleus  Ran GTPase binding  protein transporter activity  
Ontology : EGO-EBIfibrillar center  protein binding  nucleus  cytoplasm  ribosomal protein import into nucleus  Ran GTPase binding  protein transporter activity  
NDEx NetworkIPO11
Atlas of Cancer Signalling NetworkIPO11
Wikipedia pathwaysIPO11
Orthology - Evolution
OrthoDB51194
GeneTree (enSembl)ENSG00000086200
Phylogenetic Trees/Animal Genes : TreeFamIPO11
HOVERGENQ9UI26
HOGENOMQ9UI26
Homologs : HomoloGeneIPO11
Homology/Alignments : Family Browser (UCSC)IPO11
Gene fusions - Rearrangements
Fusion : MitelmanIPO11/TNFAIP8 [5q12.1/5q23.1]  
Fusion: TCGA_MDACCIPO11 5q12.1 TNFAIP8 5q23.1 BRCA
Tumor Fusion PortalIPO11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIPO11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IPO11
dbVarIPO11
ClinVarIPO11
1000_GenomesIPO11 
Exome Variant ServerIPO11
ExAC (Exome Aggregation Consortium)ENSG00000086200
GNOMAD BrowserENSG00000086200
Genetic variants : HAPMAP51194
Genomic Variants (DGV)IPO11 [DGVbeta]
DECIPHERIPO11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIPO11 
Mutations
ICGC Data PortalIPO11 
TCGA Data PortalIPO11 
Broad Tumor PortalIPO11
OASIS PortalIPO11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIPO11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIPO11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IPO11
DgiDB (Drug Gene Interaction Database)IPO11
DoCM (Curated mutations)IPO11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IPO11 (select a term)
intoGenIPO11
Cancer3DIPO11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610889   
Orphanet
DisGeNETIPO11
MedgenIPO11
Genetic Testing Registry IPO11
NextProtQ9UI26 [Medical]
TSGene51194
GENETestsIPO11
Target ValidationIPO11
Huge Navigator IPO11 [HugePedia]
snp3D : Map Gene to Disease51194
BioCentury BCIQIPO11
ClinGenIPO11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51194
Chemical/Pharm GKB GenePA134936197
Clinical trialIPO11
Miscellaneous
canSAR (ICR)IPO11 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIPO11
EVEXIPO11
GoPubMedIPO11
iHOPIPO11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:18:01 CET 2017

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