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IPO11 (importin 11)

Identity

Alias (NCBI)RanBP11
HGNC (Hugo) IPO11
HGNC Alias symbRanBP11
LocusID (NCBI) 51194
Atlas_Id 47389
Location 5q12.1  [Link to chromosome band 5q12]
Location_base_pair Starts at 62412746 and ends at 62628589 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C5orf28 (5p12) / IPO11 (5q12.1)IPO11 (5q12.1) / KIAA0825 (5q15)IPO11 (5q12.1) / RFFL (17q12)
IPO11 (5q12.1) / SAP30BP (17q25.1)IPO11 (5q12.1) / TNFAIP8 (5q23.1)SH3TC2 (5q32) / IPO11 (5q12.1)
IPO11 5q12.1 / TNFAIP8 5q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IPO11   20628
Cards
Entrez_Gene (NCBI)IPO11    importin 11
AliasesRanBP11
GeneCards (Weizmann)IPO11
Ensembl hg19 (Hinxton)ENSG00000086200 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000086200 [Gene_View]  ENSG00000086200 [Sequence]  chr5:62412746-62628589 [Contig_View]  IPO11 [Vega]
ICGC DataPortalENSG00000086200
TCGA cBioPortalIPO11
AceView (NCBI)IPO11
Genatlas (Paris)IPO11
SOURCE (Princeton)IPO11
Genetics Home Reference (NIH)IPO11
Genomic and cartography
GoldenPath hg38 (UCSC)IPO11  -     chr5:62412746-62628589 +  5q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IPO11  -     5q12.1   [Description]    (hg19-Feb_2009)
GoldenPathIPO11 - 5q12.1 [CytoView hg19]  IPO11 - 5q12.1 [CytoView hg38]
ImmunoBaseENSG00000086200
Genome Data Viewer NCBIIPO11 [Mapview hg19]  
OMIM610889   
Gene and transcription
Genbank (Entrez)AF111109 AK001696 AK023177 AK124969 AK302781
RefSeq transcript (Entrez)NM_001134779 NM_016338
Consensus coding sequences : CCDS (NCBI)IPO11
Gene ExpressionIPO11 [ NCBI-GEO ]   IPO11 [ EBI - ARRAY_EXPRESS ]   IPO11 [ SEEK ]   IPO11 [ MEM ]
Gene Expression Viewer (FireBrowse)IPO11 [ Firebrowse - Broad ]
GenevisibleExpression of IPO11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51194
GTEX Portal (Tissue expression)IPO11
Human Protein AtlasENSG00000086200-IPO11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UI26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UI26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UI26
PhosPhoSitePlusQ9UI26
Domaine pattern : Prosite (Expaxy)IMPORTIN_B_NT (PS50166)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Importin-beta_N   
Domain families : Pfam (Sanger)IBN_N (PF03810)   
Domain families : Pfam (NCBI)pfam03810   
Domain families : Smart (EMBL)IBN_N (SM00913)  
Conserved Domain (NCBI)IPO11
SuperfamilyQ9UI26
AlphaFold pdb e-kbQ9UI26   
Human Protein Atlas [tissue]ENSG00000086200-IPO11 [tissue]
HPRD10003
Protein Interaction databases
DIP (DOE-UCLA)Q9UI26
IntAct (EBI)Q9UI26
BioGRIDIPO11
STRING (EMBL)IPO11
ZODIACIPO11
Ontologies - Pathways
QuickGOQ9UI26
Ontology : AmiGOprotein binding  nuclear envelope  nucleoplasm  cytosol  cytosol  protein import into nucleus  ribosomal protein import into nucleus  small GTPase binding  nuclear import signal receptor activity  
Ontology : EGO-EBIprotein binding  nuclear envelope  nucleoplasm  cytosol  cytosol  protein import into nucleus  ribosomal protein import into nucleus  small GTPase binding  nuclear import signal receptor activity  
NDEx NetworkIPO11
Atlas of Cancer Signalling NetworkIPO11
Wikipedia pathwaysIPO11
Orthology - Evolution
OrthoDB51194
GeneTree (enSembl)ENSG00000086200
Phylogenetic Trees/Animal Genes : TreeFamIPO11
Homologs : HomoloGeneIPO11
Homology/Alignments : Family Browser (UCSC)IPO11
Gene fusions - Rearrangements
Fusion : MitelmanIPO11/TNFAIP8 [5q12.1/5q23.1]  
Fusion : QuiverIPO11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIPO11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IPO11
dbVarIPO11
ClinVarIPO11
MonarchIPO11
1000_GenomesIPO11 
Exome Variant ServerIPO11
GNOMAD BrowserENSG00000086200
Varsome BrowserIPO11
ACMGIPO11 variants
VarityQ9UI26
Genomic Variants (DGV)IPO11 [DGVbeta]
DECIPHERIPO11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIPO11 
Mutations
ICGC Data PortalIPO11 
TCGA Data PortalIPO11 
Broad Tumor PortalIPO11
OASIS PortalIPO11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIPO11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIPO11
Mutations and Diseases : HGMDIPO11
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIPO11
DgiDB (Drug Gene Interaction Database)IPO11
DoCM (Curated mutations)IPO11
CIViC (Clinical Interpretations of Variants in Cancer)IPO11
Cancer3DIPO11
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610889   
Orphanet
DisGeNETIPO11
MedgenIPO11
Genetic Testing Registry IPO11
NextProtQ9UI26 [Medical]
GENETestsIPO11
Target ValidationIPO11
Huge Navigator IPO11 [HugePedia]
ClinGenIPO11
Clinical trials, drugs, therapy
MyCancerGenomeIPO11
Protein Interactions : CTDIPO11
Pharm GKB GenePA134936197
PharosQ9UI26
Clinical trialIPO11
Miscellaneous
canSAR (ICR)IPO11
HarmonizomeIPO11
DataMed IndexIPO11
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIPO11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:14:07 CEST 2021

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