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IPO13 (importin 13)

Identity

Alias_symbol (synonym)IMP13
KIAA0724
RANBP13
Other aliasKAP13
LGL2
HGNC (Hugo) IPO13
LocusID (NCBI) 9670
Atlas_Id 52899
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 44412478 and ends at 44433694 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MALAT1 (11q13.1) / IPO13 (1p34.1)MAPK8IP3 (16p13.3) / IPO13 (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IPO13   16853
Cards
Entrez_Gene (NCBI)IPO13  9670  importin 13
AliasesIMP13; KAP13; LGL2; RANBP13
GeneCards (Weizmann)IPO13
Ensembl hg19 (Hinxton)ENSG00000117408 [Gene_View]  chr1:44412478-44433694 [Contig_View]  IPO13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000117408 [Gene_View]  chr1:44412478-44433694 [Contig_View]  IPO13 [Vega]
ICGC DataPortalENSG00000117408
TCGA cBioPortalIPO13
AceView (NCBI)IPO13
Genatlas (Paris)IPO13
WikiGenes9670
SOURCE (Princeton)IPO13
Genetics Home Reference (NIH)IPO13
Genomic and cartography
GoldenPath hg19 (UCSC)IPO13  -     chr1:44412478-44433694 +  1p34.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IPO13  -     1p34.1   [Description]    (hg38-Dec_2013)
EnsemblIPO13 - 1p34.1 [CytoView hg19]  IPO13 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIIPO13 [Mapview hg19]  IPO13 [Mapview hg38]
OMIM610411   
Gene and transcription
Genbank (Entrez)AB018267 AF267987 AK023441 AK091565 AK290173
RefSeq transcript (Entrez)NM_014652
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)IPO13
Cluster EST : UnigeneHs.158497 [ NCBI ]
CGAP (NCI)Hs.158497
Alternative Splicing GalleryENSG00000117408
Gene ExpressionIPO13 [ NCBI-GEO ]   IPO13 [ EBI - ARRAY_EXPRESS ]   IPO13 [ SEEK ]   IPO13 [ MEM ]
Gene Expression Viewer (FireBrowse)IPO13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9670
GTEX Portal (Tissue expression)IPO13
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94829   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94829  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94829
Splice isoforms : SwissVarO94829
PhosPhoSitePlusO94829
Domaine pattern : Prosite (Expaxy)IMPORTIN_B_NT (PS50166)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Exportin-1/Importin-b-like    Importin-beta_N   
Domain families : Pfam (Sanger)IBN_N (PF03810)    Xpo1 (PF08389)   
Domain families : Pfam (NCBI)pfam03810    pfam08389   
Domain families : Smart (EMBL)IBN_N (SM00913)  
Conserved Domain (NCBI)IPO13
DMDM Disease mutations9670
Blocks (Seattle)IPO13
PDB (SRS)2X19    2XWU    3ZJY   
PDB (PDBSum)2X19    2XWU    3ZJY   
PDB (IMB)2X19    2XWU    3ZJY   
PDB (RSDB)2X19    2XWU    3ZJY   
Structural Biology KnowledgeBase2X19    2XWU    3ZJY   
SCOP (Structural Classification of Proteins)2X19    2XWU    3ZJY   
CATH (Classification of proteins structures)2X19    2XWU    3ZJY   
SuperfamilyO94829
Human Protein AtlasENSG00000117408
Peptide AtlasO94829
HPRD13742
IPIIPI00005651   IPI00513961   
Protein Interaction databases
DIP (DOE-UCLA)O94829
IntAct (EBI)O94829
FunCoupENSG00000117408
BioGRIDIPO13
STRING (EMBL)IPO13
ZODIACIPO13
Ontologies - Pathways
QuickGOO94829
Ontology : AmiGOprotein binding  cytoplasm  protein import into nucleus  nuclear localization sequence binding  Ran GTPase binding  protein transporter activity  nuclear membrane  
Ontology : EGO-EBIprotein binding  cytoplasm  protein import into nucleus  nuclear localization sequence binding  Ran GTPase binding  protein transporter activity  nuclear membrane  
NDEx NetworkIPO13
Atlas of Cancer Signalling NetworkIPO13
Wikipedia pathwaysIPO13
Orthology - Evolution
OrthoDB9670
GeneTree (enSembl)ENSG00000117408
Phylogenetic Trees/Animal Genes : TreeFamIPO13
HOVERGENO94829
HOGENOMO94829
Homologs : HomoloGeneIPO13
Homology/Alignments : Family Browser (UCSC)IPO13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIPO13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IPO13
dbVarIPO13
ClinVarIPO13
1000_GenomesIPO13 
Exome Variant ServerIPO13
ExAC (Exome Aggregation Consortium)IPO13 (select the gene name)
Genetic variants : HAPMAP9670
Genomic Variants (DGV)IPO13 [DGVbeta]
DECIPHER (Syndromes)1:44412478-44433694  ENSG00000117408
CONAN: Copy Number AnalysisIPO13 
Mutations
ICGC Data PortalIPO13 
TCGA Data PortalIPO13 
Broad Tumor PortalIPO13
OASIS PortalIPO13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIPO13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIPO13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IPO13
DgiDB (Drug Gene Interaction Database)IPO13
DoCM (Curated mutations)IPO13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IPO13 (select a term)
intoGenIPO13
Cancer3DIPO13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610411   
Orphanet
MedgenIPO13
Genetic Testing Registry IPO13
NextProtO94829 [Medical]
TSGene9670
GENETestsIPO13
Huge Navigator IPO13 [HugePedia]
snp3D : Map Gene to Disease9670
BioCentury BCIQIPO13
ClinGenIPO13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9670
Chemical/Pharm GKB GenePA134981096
Clinical trialIPO13
Miscellaneous
canSAR (ICR)IPO13 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIPO13
EVEXIPO13
GoPubMedIPO13
iHOPIPO13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:10:59 CET 2017

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