Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IPO4 (importin 4)

Identity

Alias_symbol (synonym)Imp4
FLJ23338
Other alias
HGNC (Hugo) IPO4
LocusID (NCBI) 79711
Atlas_Id 51761
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24180219 and ends at 24188918 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLIP4 (2p23.2) / IPO4 (14q12)IDO1 (8p11.21) / IPO4 (14q12)IPO4 (14q12) / MBD3 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IPO4   19426
Cards
Entrez_Gene (NCBI)IPO4  79711  importin 4
AliasesImp4
GeneCards (Weizmann)IPO4
Ensembl hg19 (Hinxton)ENSG00000196497 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196497 [Gene_View]  chr14:24180219-24188918 [Contig_View]  IPO4 [Vega]
ICGC DataPortalENSG00000196497
TCGA cBioPortalIPO4
AceView (NCBI)IPO4
Genatlas (Paris)IPO4
WikiGenes79711
SOURCE (Princeton)IPO4
Genetics Home Reference (NIH)IPO4
Genomic and cartography
GoldenPath hg38 (UCSC)IPO4  -     chr14:24180219-24188918 -  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IPO4  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblIPO4 - 14q12 [CytoView hg19]  IPO4 - 14q12 [CytoView hg38]
Mapping of homologs : NCBIIPO4 [Mapview hg19]  IPO4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB208897 AF411122 AK026991 AK027871 AK056527
RefSeq transcript (Entrez)NM_024658
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IPO4
Cluster EST : UnigeneHs.411865 [ NCBI ]
CGAP (NCI)Hs.411865
Alternative Splicing GalleryENSG00000196497
Gene ExpressionIPO4 [ NCBI-GEO ]   IPO4 [ EBI - ARRAY_EXPRESS ]   IPO4 [ SEEK ]   IPO4 [ MEM ]
Gene Expression Viewer (FireBrowse)IPO4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79711
GTEX Portal (Tissue expression)IPO4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEX9
Splice isoforms : SwissVarQ8TEX9
PhosPhoSitePlusQ8TEX9
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)    IMPORTIN_B_NT (PS50166)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    HEAT    HEAT_type_2    Importin-beta_N    TOG   
Domain families : Pfam (Sanger)HEAT (PF02985)    IBN_N (PF03810)   
Domain families : Pfam (NCBI)pfam02985    pfam03810   
Domain families : Smart (EMBL)IBN_N (SM00913)  TOG (SM01349)  
Conserved Domain (NCBI)IPO4
DMDM Disease mutations79711
Blocks (Seattle)IPO4
SuperfamilyQ8TEX9
Human Protein AtlasENSG00000196497
Peptide AtlasQ8TEX9
HPRD07022
IPIIPI00156374   IPI00398009   IPI00744488   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEX9
IntAct (EBI)Q8TEX9
FunCoupENSG00000196497
BioGRIDIPO4
STRING (EMBL)IPO4
ZODIACIPO4
Ontologies - Pathways
QuickGOQ8TEX9
Ontology : AmiGOprotein import into nucleus, translocation  nuclear chromatin  protein binding  nuclear pore  cytoplasm  DNA replication-dependent nucleosome assembly  DNA replication-independent nucleosome assembly  NLS-bearing protein import into nucleus  ribosomal protein import into nucleus  nuclear localization sequence binding  Ran GTPase binding  protein transporter activity  protein transport  membrane  nuclear membrane  nuclear periphery  protein complex  
Ontology : EGO-EBIprotein import into nucleus, translocation  nuclear chromatin  protein binding  nuclear pore  cytoplasm  DNA replication-dependent nucleosome assembly  DNA replication-independent nucleosome assembly  NLS-bearing protein import into nucleus  ribosomal protein import into nucleus  nuclear localization sequence binding  Ran GTPase binding  protein transporter activity  protein transport  membrane  nuclear membrane  nuclear periphery  protein complex  
NDEx NetworkIPO4
Atlas of Cancer Signalling NetworkIPO4
Wikipedia pathwaysIPO4
Orthology - Evolution
OrthoDB79711
GeneTree (enSembl)ENSG00000196497
Phylogenetic Trees/Animal Genes : TreeFamIPO4
HOVERGENQ8TEX9
HOGENOMQ8TEX9
Homologs : HomoloGeneIPO4
Homology/Alignments : Family Browser (UCSC)IPO4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIPO4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IPO4
dbVarIPO4
ClinVarIPO4
1000_GenomesIPO4 
Exome Variant ServerIPO4
ExAC (Exome Aggregation Consortium)IPO4 (select the gene name)
Genetic variants : HAPMAP79711
Genomic Variants (DGV)IPO4 [DGVbeta]
DECIPHERIPO4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIPO4 
Mutations
ICGC Data PortalIPO4 
TCGA Data PortalIPO4 
Broad Tumor PortalIPO4
OASIS PortalIPO4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIPO4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIPO4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IPO4
DgiDB (Drug Gene Interaction Database)IPO4
DoCM (Curated mutations)IPO4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IPO4 (select a term)
intoGenIPO4
Cancer3DIPO4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIPO4
Genetic Testing Registry IPO4
NextProtQ8TEX9 [Medical]
TSGene79711
GENETestsIPO4
Target ValidationIPO4
Huge Navigator IPO4 [HugePedia]
snp3D : Map Gene to Disease79711
BioCentury BCIQIPO4
ClinGenIPO4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79711
Chemical/Pharm GKB GenePA134968932
Clinical trialIPO4
Miscellaneous
canSAR (ICR)IPO4 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIPO4
EVEXIPO4
GoPubMedIPO4
iHOPIPO4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:56:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.