Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IPO7 (importin 7)

Identity

Alias_namesRANBP7
RAN binding protein 7
Alias_symbol (synonym)Imp7
Other alias
HGNC (Hugo) IPO7
LocusID (NCBI) 10527
Atlas_Id 40987
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 9384622 and ends at 9448127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AD_1 () / IPO7 (11p15.4)IPO7 (11p15.4) / AKIP1 (11p15.4)IPO7 (11p15.4) / IPO7 (11p15.4)
IPO7 (11p15.4) / MB21D1 (6q13)IPO7 (11p15.4) / MYH9 (22q12.3)IPO7 (11p15.4) / TMEM41B (11p15.4)
ISM1 (20p12.1) / IPO7 (11p15.4)RDH11 (14q24.1) / IPO7 (11p15.4)IPO7 11p15.4 / AKIP1 11p15.4
IPO7 11p15.4 / TMEM41B 11p15.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IPO7   9852
Cards
Entrez_Gene (NCBI)IPO7  10527  importin 7
AliasesImp7; RANBP7
GeneCards (Weizmann)IPO7
Ensembl hg19 (Hinxton)ENSG00000205339 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205339 [Gene_View]  chr11:9384622-9448127 [Contig_View]  IPO7 [Vega]
ICGC DataPortalENSG00000205339
TCGA cBioPortalIPO7
AceView (NCBI)IPO7
Genatlas (Paris)IPO7
WikiGenes10527
SOURCE (Princeton)IPO7
Genetics Home Reference (NIH)IPO7
Genomic and cartography
GoldenPath hg38 (UCSC)IPO7  -     chr11:9384622-9448127 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IPO7  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblIPO7 - 11p15.4 [CytoView hg19]  IPO7 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIIPO7 [Mapview hg19]  IPO7 [Mapview hg38]
OMIM605586   
Gene and transcription
Genbank (Entrez)AF098799 AK027487 AK027892 AK074908 AK312885
RefSeq transcript (Entrez)NM_006391
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IPO7
Cluster EST : UnigeneHs.744911 [ NCBI ]
CGAP (NCI)Hs.744911
Alternative Splicing GalleryENSG00000205339
Gene ExpressionIPO7 [ NCBI-GEO ]   IPO7 [ EBI - ARRAY_EXPRESS ]   IPO7 [ SEEK ]   IPO7 [ MEM ]
Gene Expression Viewer (FireBrowse)IPO7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10527
GTEX Portal (Tissue expression)IPO7
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95373   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95373  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95373
Splice isoforms : SwissVarO95373
PhosPhoSitePlusO95373
Domaine pattern : Prosite (Expaxy)IMPORTIN_B_NT (PS50166)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Cse1    Importin-beta_N   
Domain families : Pfam (Sanger)Cse1 (PF08506)    IBN_N (PF03810)   
Domain families : Pfam (NCBI)pfam08506    pfam03810   
Domain families : Smart (EMBL)IBN_N (SM00913)  
Conserved Domain (NCBI)IPO7
DMDM Disease mutations10527
Blocks (Seattle)IPO7
SuperfamilyO95373
Human Protein AtlasENSG00000205339
Peptide AtlasO95373
HPRD09280
IPIIPI00007402   IPI00981116   IPI00981775   
Protein Interaction databases
DIP (DOE-UCLA)O95373
IntAct (EBI)O95373
FunCoupENSG00000205339
BioGRIDIPO7
STRING (EMBL)IPO7
ZODIACIPO7
Ontologies - Pathways
QuickGOO95373
Ontology : AmiGOtransporter activity  protein binding  nuclear pore  nucleoplasm  cytosol  protein import into nucleus  signal transduction  Ran GTPase binding  membrane  viral process  GTPase regulator activity  histone binding  innate immune response  SMAD binding  regulation of catalytic activity  
Ontology : EGO-EBItransporter activity  protein binding  nuclear pore  nucleoplasm  cytosol  protein import into nucleus  signal transduction  Ran GTPase binding  membrane  viral process  GTPase regulator activity  histone binding  innate immune response  SMAD binding  regulation of catalytic activity  
NDEx NetworkIPO7
Atlas of Cancer Signalling NetworkIPO7
Wikipedia pathwaysIPO7
Orthology - Evolution
OrthoDB10527
GeneTree (enSembl)ENSG00000205339
Phylogenetic Trees/Animal Genes : TreeFamIPO7
HOVERGENO95373
HOGENOMO95373
Homologs : HomoloGeneIPO7
Homology/Alignments : Family Browser (UCSC)IPO7
Gene fusions - Rearrangements
Fusion : MitelmanIPO7/AKIP1 [11p15.4/11p15.4]  
Fusion : MitelmanIPO7/TMEM41B [11p15.4/11p15.4]  [t(11;11)(p15;p15)]  
Fusion: TCGAIPO7 11p15.4 AKIP1 11p15.4 LUAD
Fusion: TCGAIPO7 11p15.4 TMEM41B 11p15.4 LUAD
Fusion Cancer (Beijing)AD_1 [IPO7]  -  11p15.4 [FUSC001006]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIPO7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IPO7
dbVarIPO7
ClinVarIPO7
1000_GenomesIPO7 
Exome Variant ServerIPO7
ExAC (Exome Aggregation Consortium)IPO7 (select the gene name)
Genetic variants : HAPMAP10527
Genomic Variants (DGV)IPO7 [DGVbeta]
DECIPHERIPO7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIPO7 
Mutations
ICGC Data PortalIPO7 
TCGA Data PortalIPO7 
Broad Tumor PortalIPO7
OASIS PortalIPO7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIPO7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIPO7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IPO7
DgiDB (Drug Gene Interaction Database)IPO7
DoCM (Curated mutations)IPO7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IPO7 (select a term)
intoGenIPO7
Cancer3DIPO7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605586   
Orphanet
MedgenIPO7
Genetic Testing Registry IPO7
NextProtO95373 [Medical]
TSGene10527
GENETestsIPO7
Target ValidationIPO7
Huge Navigator IPO7 [HugePedia]
snp3D : Map Gene to Disease10527
BioCentury BCIQIPO7
ClinGenIPO7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10527
Chemical/Pharm GKB GenePA34213
Clinical trialIPO7
Miscellaneous
canSAR (ICR)IPO7 (select the gene name)
Probes
Litterature
PubMed80 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIPO7
EVEXIPO7
GoPubMedIPO7
iHOPIPO7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:04:09 CEST 2017

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