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IPO9 (importin 9)

Identity

Alias_symbol (synonym)Imp9
FLJ10402
Other alias
HGNC (Hugo) IPO9
LocusID (NCBI) 55705
Atlas_Id 64639
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201829160 and ends at 201884294 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
INS-IGF2 (11p15.5) / IPO9 (1q32.1)IPO9 (1q32.1) / IPO9 (1q32.1)IPO9 (1q32.1) / ZBTB44 (11q24.3)
LEPROT (1p31.3) / IPO9 (1q32.1)LOC100507217 () / IPO9 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IPO9   19425
Cards
Entrez_Gene (NCBI)IPO9  55705  importin 9
AliasesImp9
GeneCards (Weizmann)IPO9
Ensembl hg19 (Hinxton)ENSG00000198700 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198700 [Gene_View]  chr1:201829160-201884294 [Contig_View]  IPO9 [Vega]
ICGC DataPortalENSG00000198700
TCGA cBioPortalIPO9
AceView (NCBI)IPO9
Genatlas (Paris)IPO9
WikiGenes55705
SOURCE (Princeton)IPO9
Genetics Home Reference (NIH)IPO9
Genomic and cartography
GoldenPath hg38 (UCSC)IPO9  -     chr1:201829160-201884294 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IPO9  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblIPO9 - 1q32.1 [CytoView hg19]  IPO9 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIIPO9 [Mapview hg19]  IPO9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033018 AF070633 AF161391 AF410465 AK001264
RefSeq transcript (Entrez)NM_018085
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IPO9
Cluster EST : UnigeneHs.596014 [ NCBI ]
CGAP (NCI)Hs.596014
Alternative Splicing GalleryENSG00000198700
Gene ExpressionIPO9 [ NCBI-GEO ]   IPO9 [ EBI - ARRAY_EXPRESS ]   IPO9 [ SEEK ]   IPO9 [ MEM ]
Gene Expression Viewer (FireBrowse)IPO9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55705
GTEX Portal (Tissue expression)IPO9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96P70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96P70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96P70
Splice isoforms : SwissVarQ96P70
PhosPhoSitePlusQ96P70
Domaine pattern : Prosite (Expaxy)IMPORTIN_B_NT (PS50166)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Importin-beta_N   
Domain families : Pfam (Sanger)IBN_N (PF03810)   
Domain families : Pfam (NCBI)pfam03810   
Domain families : Smart (EMBL)IBN_N (SM00913)  
Conserved Domain (NCBI)IPO9
DMDM Disease mutations55705
Blocks (Seattle)IPO9
SuperfamilyQ96P70
Human Protein AtlasENSG00000198700
Peptide AtlasQ96P70
HPRD17154
IPIIPI00185146   IPI00514836   
Protein Interaction databases
DIP (DOE-UCLA)Q96P70
IntAct (EBI)Q96P70
FunCoupENSG00000198700
BioGRIDIPO9
STRING (EMBL)IPO9
ZODIACIPO9
Ontologies - Pathways
QuickGOQ96P70
Ontology : AmiGOprotein binding  nucleus  cytoplasm  protein import into nucleus  Ran GTPase binding  protein transporter activity  membrane  histone binding  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  protein import into nucleus  Ran GTPase binding  protein transporter activity  membrane  histone binding  
NDEx NetworkIPO9
Atlas of Cancer Signalling NetworkIPO9
Wikipedia pathwaysIPO9
Orthology - Evolution
OrthoDB55705
GeneTree (enSembl)ENSG00000198700
Phylogenetic Trees/Animal Genes : TreeFamIPO9
HOVERGENQ96P70
HOGENOMQ96P70
Homologs : HomoloGeneIPO9
Homology/Alignments : Family Browser (UCSC)IPO9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIPO9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IPO9
dbVarIPO9
ClinVarIPO9
1000_GenomesIPO9 
Exome Variant ServerIPO9
ExAC (Exome Aggregation Consortium)IPO9 (select the gene name)
Genetic variants : HAPMAP55705
Genomic Variants (DGV)IPO9 [DGVbeta]
DECIPHERIPO9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIPO9 
Mutations
ICGC Data PortalIPO9 
TCGA Data PortalIPO9 
Broad Tumor PortalIPO9
OASIS PortalIPO9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIPO9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIPO9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IPO9
DgiDB (Drug Gene Interaction Database)IPO9
DoCM (Curated mutations)IPO9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IPO9 (select a term)
intoGenIPO9
Cancer3DIPO9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIPO9
Genetic Testing Registry IPO9
NextProtQ96P70 [Medical]
TSGene55705
GENETestsIPO9
Target ValidationIPO9
Huge Navigator IPO9 [HugePedia]
snp3D : Map Gene to Disease55705
BioCentury BCIQIPO9
ClinGenIPO9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55705
Chemical/Pharm GKB GenePA134930111
Clinical trialIPO9
Miscellaneous
canSAR (ICR)IPO9 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIPO9
EVEXIPO9
GoPubMedIPO9
iHOPIPO9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:35 CEST 2017

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