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IPP (intracisternal A particle-promoted polypeptide)

Identity

Alias_symbol (synonym)KLHL27
Other alias
HGNC (Hugo) IPP
LocusID (NCBI) 3652
Atlas_Id 64641
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 45694326 and ends at 45750813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IPP (1p34.1) / DTX2P1-UPK3BP1-PMS2P11 (7q11.23)IPP (1p34.1) / GPBP1L1 (1p34.1)TESK2 (1p34.1) / IPP (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IPP   6108
Cards
Entrez_Gene (NCBI)IPP  3652  intracisternal A particle-promoted polypeptide
AliasesKLHL27
GeneCards (Weizmann)IPP
Ensembl hg19 (Hinxton)ENSG00000197429 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197429 [Gene_View]  chr1:45694326-45750813 [Contig_View]  IPP [Vega]
ICGC DataPortalENSG00000197429
TCGA cBioPortalIPP
AceView (NCBI)IPP
Genatlas (Paris)IPP
WikiGenes3652
SOURCE (Princeton)IPP
Genetics Home Reference (NIH)IPP
Genomic and cartography
GoldenPath hg38 (UCSC)IPP  -     chr1:45694326-45750813 -  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IPP  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblIPP - 1p34.1 [CytoView hg19]  IPP - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIIPP [Mapview hg19]  IPP [Mapview hg38]
OMIM147485   
Gene and transcription
Genbank (Entrez)AF156857 AK023880 BC032544 DA905423
RefSeq transcript (Entrez)NM_001145349 NM_005897
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IPP
Cluster EST : UnigeneHs.744252 [ NCBI ]
CGAP (NCI)Hs.744252
Alternative Splicing GalleryENSG00000197429
Gene ExpressionIPP [ NCBI-GEO ]   IPP [ EBI - ARRAY_EXPRESS ]   IPP [ SEEK ]   IPP [ MEM ]
Gene Expression Viewer (FireBrowse)IPP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3652
GTEX Portal (Tissue expression)IPP
Human Protein AtlasENSG00000197429-IPP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y573   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y573  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y573
Splice isoforms : SwissVarQ9Y573
PhosPhoSitePlusQ9Y573
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB-kelch_protein    BTB/POZ_dom    Gal_Oxase/kelch_b-propeller    IPP    Kelch-typ_b-propeller    Kelch_1    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam01344   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  Kelch (SM00612)  
Conserved Domain (NCBI)IPP
DMDM Disease mutations3652
Blocks (Seattle)IPP
SuperfamilyQ9Y573
Human Protein Atlas [tissue]ENSG00000197429-IPP [tissue]
Peptide AtlasQ9Y573
HPRD00940
IPIIPI00001117   IPI00642759   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y573
IntAct (EBI)Q9Y573
FunCoupENSG00000197429
BioGRIDIPP
STRING (EMBL)IPP
ZODIACIPP
Ontologies - Pathways
QuickGOQ9Y573
Ontology : AmiGOactin binding  ubiquitin-protein transferase activity  cytoplasm  actin cytoskeleton  protein ubiquitination  Cul3-RING ubiquitin ligase complex  
Ontology : EGO-EBIactin binding  ubiquitin-protein transferase activity  cytoplasm  actin cytoskeleton  protein ubiquitination  Cul3-RING ubiquitin ligase complex  
NDEx NetworkIPP
Atlas of Cancer Signalling NetworkIPP
Wikipedia pathwaysIPP
Orthology - Evolution
OrthoDB3652
GeneTree (enSembl)ENSG00000197429
Phylogenetic Trees/Animal Genes : TreeFamIPP
HOVERGENQ9Y573
HOGENOMQ9Y573
Homologs : HomoloGeneIPP
Homology/Alignments : Family Browser (UCSC)IPP
Gene fusions - Rearrangements
Fusion: Tumor Portal IPP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIPP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IPP
dbVarIPP
ClinVarIPP
1000_GenomesIPP 
Exome Variant ServerIPP
ExAC (Exome Aggregation Consortium)ENSG00000197429
GNOMAD BrowserENSG00000197429
Genetic variants : HAPMAP3652
Genomic Variants (DGV)IPP [DGVbeta]
DECIPHERIPP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIPP 
Mutations
ICGC Data PortalIPP 
TCGA Data PortalIPP 
Broad Tumor PortalIPP
OASIS PortalIPP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIPP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIPP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IPP
DgiDB (Drug Gene Interaction Database)IPP
DoCM (Curated mutations)IPP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IPP (select a term)
intoGenIPP
Cancer3DIPP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147485   
Orphanet
MedgenIPP
Genetic Testing Registry IPP
NextProtQ9Y573 [Medical]
TSGene3652
GENETestsIPP
Target ValidationIPP
Huge Navigator IPP [HugePedia]
snp3D : Map Gene to Disease3652
BioCentury BCIQIPP
ClinGenIPP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3652
Chemical/Pharm GKB GenePA29908
Clinical trialIPP
Miscellaneous
canSAR (ICR)IPP (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIPP
EVEXIPP
GoPubMedIPP
iHOPIPP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:51:39 CET 2017

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