Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IQCA1 (IQ motif containing with AAA domain 1)

Identity

Alias_namesIQCA
IQ motif containing with AAA domain
Alias_symbol (synonym)FLJ22527
DRC11
Other alias4930465P12Rik
HGNC (Hugo) IQCA1
LocusID (NCBI) 79781
Atlas_Id 64644
Location 2q37.2  [Link to chromosome band 2q37]
Location_base_pair Starts at 236324147 and ends at 236507535 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRIM1 (2p22.3) / IQCA1 (2q37.2)GALNT10 (5q33.2) / IQCA1 (2q37.2)IQCA1 (2q37.2) / PLEKHM3 (2q33.3)
IQCA1 (2q37.2) / SIK3 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IQCA1   26195
Cards
Entrez_Gene (NCBI)IQCA1  79781  IQ motif containing with AAA domain 1
Aliases4930465P12Rik; DRC11; IQCA
GeneCards (Weizmann)IQCA1
Ensembl hg19 (Hinxton)ENSG00000132321 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132321 [Gene_View]  chr2:236324147-236507535 [Contig_View]  IQCA1 [Vega]
ICGC DataPortalENSG00000132321
TCGA cBioPortalIQCA1
AceView (NCBI)IQCA1
Genatlas (Paris)IQCA1
WikiGenes79781
SOURCE (Princeton)IQCA1
Genetics Home Reference (NIH)IQCA1
Genomic and cartography
GoldenPath hg38 (UCSC)IQCA1  -     chr2:236324147-236507535 -  2q37.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IQCA1  -     2q37.2   [Description]    (hg19-Feb_2009)
EnsemblIQCA1 - 2q37.2 [CytoView hg19]  IQCA1 - 2q37.2 [CytoView hg38]
Mapping of homologs : NCBIIQCA1 [Mapview hg19]  IQCA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026180 AK054711 AK090907 AK225433 AK294105
RefSeq transcript (Entrez)NM_001270584 NM_001270585 NM_024726
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IQCA1
Cluster EST : UnigeneHs.711488 [ NCBI ]
CGAP (NCI)Hs.711488
Alternative Splicing GalleryENSG00000132321
Gene ExpressionIQCA1 [ NCBI-GEO ]   IQCA1 [ EBI - ARRAY_EXPRESS ]   IQCA1 [ SEEK ]   IQCA1 [ MEM ]
Gene Expression Viewer (FireBrowse)IQCA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79781
GTEX Portal (Tissue expression)IQCA1
Human Protein AtlasENSG00000132321-IQCA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XH1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XH1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XH1
Splice isoforms : SwissVarQ86XH1
PhosPhoSitePlusQ86XH1
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)ATPase_AAA_core    IQ_motif_EF-hand-BS    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)   
Domain families : Pfam (NCBI)pfam00004   
Conserved Domain (NCBI)IQCA1
DMDM Disease mutations79781
Blocks (Seattle)IQCA1
SuperfamilyQ86XH1
Human Protein Atlas [tissue]ENSG00000132321-IQCA1 [tissue]
Peptide AtlasQ86XH1
HPRD13743
IPIIPI00916027   IPI00413266   IPI00916093   IPI01026270   IPI00943297   IPI00938177   IPI00749137   IPI00743285   
Protein Interaction databases
DIP (DOE-UCLA)Q86XH1
IntAct (EBI)Q86XH1
FunCoupENSG00000132321
BioGRIDIQCA1
STRING (EMBL)IQCA1
ZODIACIQCA1
Ontologies - Pathways
QuickGOQ86XH1
Ontology : AmiGOATP binding  
Ontology : EGO-EBIATP binding  
NDEx NetworkIQCA1
Atlas of Cancer Signalling NetworkIQCA1
Wikipedia pathwaysIQCA1
Orthology - Evolution
OrthoDB79781
GeneTree (enSembl)ENSG00000132321
Phylogenetic Trees/Animal Genes : TreeFamIQCA1
HOVERGENQ86XH1
HOGENOMQ86XH1
Homologs : HomoloGeneIQCA1
Homology/Alignments : Family Browser (UCSC)IQCA1
Gene fusions - Rearrangements
Tumor Fusion PortalIQCA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCA1
dbVarIQCA1
ClinVarIQCA1
1000_GenomesIQCA1 
Exome Variant ServerIQCA1
ExAC (Exome Aggregation Consortium)ENSG00000132321
GNOMAD BrowserENSG00000132321
Genetic variants : HAPMAP79781
Genomic Variants (DGV)IQCA1 [DGVbeta]
DECIPHERIQCA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIQCA1 
Mutations
ICGC Data PortalIQCA1 
TCGA Data PortalIQCA1 
Broad Tumor PortalIQCA1
OASIS PortalIQCA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IQCA1
DgiDB (Drug Gene Interaction Database)IQCA1
DoCM (Curated mutations)IQCA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCA1 (select a term)
intoGenIQCA1
Cancer3DIQCA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIQCA1
MedgenIQCA1
Genetic Testing Registry IQCA1
NextProtQ86XH1 [Medical]
TSGene79781
GENETestsIQCA1
Target ValidationIQCA1
Huge Navigator IQCA1 [HugePedia]
snp3D : Map Gene to Disease79781
BioCentury BCIQIQCA1
ClinGenIQCA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79781
Chemical/Pharm GKB GenePA162392257
Clinical trialIQCA1
Miscellaneous
canSAR (ICR)IQCA1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCA1
EVEXIQCA1
GoPubMedIQCA1
iHOPIQCA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:04:46 CET 2017

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