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IQCB1 (IQ motif containing B1)

Identity

Alias (NCBI)NPHP5
PIQ
SLSN5
HGNC (Hugo) IQCB1
HGNC Alias symbKIAA0036
NPHP5
SLSN5
HGNC Alias namenephrocystin-5
HGNC Previous nameIQ calmodulin-binding motif containing 1
LocusID (NCBI) 9657
Atlas_Id 64645
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 121769761 and ends at 121835079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GOLGB1 (3q13.33) / IQCB1 (3q13.33)IQCB1 (3q13.33) / CACNG4 (17q24.2)IQCB1 (3q13.33) / ILDR1 (3q13.33)
MAP2 (2q34) / IQCB1 (3q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IQCB1   28949
Cards
Entrez_Gene (NCBI)IQCB1    IQ motif containing B1
AliasesNPHP5; PIQ; SLSN5
GeneCards (Weizmann)IQCB1
Ensembl hg19 (Hinxton)ENSG00000173226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173226 [Gene_View]  ENSG00000173226 [Sequence]  chr3:121769761-121835079 [Contig_View]  IQCB1 [Vega]
ICGC DataPortalENSG00000173226
TCGA cBioPortalIQCB1
AceView (NCBI)IQCB1
Genatlas (Paris)IQCB1
SOURCE (Princeton)IQCB1
Genetics Home Reference (NIH)IQCB1
Genomic and cartography
GoldenPath hg38 (UCSC)IQCB1  -     chr3:121769761-121835079 -  3q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IQCB1  -     3q13.33   [Description]    (hg19-Feb_2009)
GoldenPathIQCB1 - 3q13.33 [CytoView hg19]  IQCB1 - 3q13.33 [CytoView hg38]
ImmunoBaseENSG00000173226
Genome Data Viewer NCBIIQCB1 [Mapview hg19]  
OMIM609237   609254   
Gene and transcription
Genbank (Entrez)AB062481 AL042102 AY714228 AY964667 AY964668
RefSeq transcript (Entrez)NM_001023570 NM_001023571 NM_001319107
Consensus coding sequences : CCDS (NCBI)IQCB1
Gene ExpressionIQCB1 [ NCBI-GEO ]   IQCB1 [ EBI - ARRAY_EXPRESS ]   IQCB1 [ SEEK ]   IQCB1 [ MEM ]
Gene Expression Viewer (FireBrowse)IQCB1 [ Firebrowse - Broad ]
GenevisibleExpression of IQCB1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9657
GTEX Portal (Tissue expression)IQCB1
Human Protein AtlasENSG00000173226-IQCB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15051   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15051  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15051
PhosPhoSitePlusQ15051
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)ARM-type_fold    IQ_motif_EF-hand-BS    IQCB1    P-loop_NTPase   
Domain families : Pfam (Sanger)IQ (PF00612)   
Domain families : Pfam (NCBI)pfam00612   
Domain families : Smart (EMBL)IQ (SM00015)  
Conserved Domain (NCBI)IQCB1
SuperfamilyQ15051
AlphaFold pdb e-kbQ15051   
Human Protein Atlas [tissue]ENSG00000173226-IQCB1 [tissue]
HPRD11049
Protein Interaction databases
DIP (DOE-UCLA)Q15051
IntAct (EBI)Q15051
BioGRIDIQCB1
STRING (EMBL)IQCB1
ZODIACIQCB1
Ontologies - Pathways
QuickGOQ15051
Ontology : AmiGOphotoreceptor outer segment  protein binding  calmodulin binding  nucleoplasm  centrosome  centriole  cytosol  cilium  microtubule cytoskeleton  enzyme binding  photoreceptor connecting cilium  intercellular bridge  photoreceptor cell maintenance  maintenance of animal organ identity  cilium assembly  cilium assembly  extracellular exosome  mitotic spindle  ciliary basal body-plasma membrane docking  
Ontology : EGO-EBIphotoreceptor outer segment  protein binding  calmodulin binding  nucleoplasm  centrosome  centriole  cytosol  cilium  microtubule cytoskeleton  enzyme binding  photoreceptor connecting cilium  intercellular bridge  photoreceptor cell maintenance  maintenance of animal organ identity  cilium assembly  cilium assembly  extracellular exosome  mitotic spindle  ciliary basal body-plasma membrane docking  
NDEx NetworkIQCB1
Atlas of Cancer Signalling NetworkIQCB1
Wikipedia pathwaysIQCB1
Orthology - Evolution
OrthoDB9657
GeneTree (enSembl)ENSG00000173226
Phylogenetic Trees/Animal Genes : TreeFamIQCB1
Homologs : HomoloGeneIQCB1
Homology/Alignments : Family Browser (UCSC)IQCB1
Gene fusions - Rearrangements
Fusion : QuiverIQCB1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCB1
dbVarIQCB1
ClinVarIQCB1
MonarchIQCB1
1000_GenomesIQCB1 
Exome Variant ServerIQCB1
GNOMAD BrowserENSG00000173226
Varsome BrowserIQCB1
ACMGIQCB1 variants
VarityQ15051
Genomic Variants (DGV)IQCB1 [DGVbeta]
DECIPHERIQCB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIQCB1 
Mutations
ICGC Data PortalIQCB1 
TCGA Data PortalIQCB1 
Broad Tumor PortalIQCB1
OASIS PortalIQCB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCB1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIQCB1
Mutations and Diseases : HGMDIQCB1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIQCB1
DgiDB (Drug Gene Interaction Database)IQCB1
DoCM (Curated mutations)IQCB1
CIViC (Clinical Interpretations of Variants in Cancer)IQCB1
Cancer3DIQCB1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609237    609254   
Orphanet2824    3243   
DisGeNETIQCB1
MedgenIQCB1
Genetic Testing Registry IQCB1
NextProtQ15051 [Medical]
GENETestsIQCB1
Target ValidationIQCB1
Huge Navigator IQCB1 [HugePedia]
ClinGenIQCB1
Clinical trials, drugs, therapy
MyCancerGenomeIQCB1
Protein Interactions : CTDIQCB1
Pharm GKB GenePA134869761
PharosQ15051
Clinical trialIQCB1
Miscellaneous
canSAR (ICR)IQCB1
HarmonizomeIQCB1
DataMed IndexIQCB1
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIQCB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:53:54 CEST 2021

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