Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IQCB1 (IQ motif containing B1)

Identity

Alias_namesIQ calmodulin-binding motif containing 1
Alias_symbol (synonym)KIAA0036
NPHP5
SLSN5
Other aliasPIQ
HGNC (Hugo) IQCB1
LocusID (NCBI) 9657
Atlas_Id 64645
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 121769761 and ends at 121835079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GOLGB1 (3q13.33) / IQCB1 (3q13.33)IQCB1 (3q13.33) / CACNG4 (17q24.2)IQCB1 (3q13.33) / ILDR1 (3q13.33)
MAP2 (2q34) / IQCB1 (3q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IQCB1   28949
Cards
Entrez_Gene (NCBI)IQCB1  9657  IQ motif containing B1
AliasesNPHP5; PIQ; SLSN5
GeneCards (Weizmann)IQCB1
Ensembl hg19 (Hinxton)ENSG00000173226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173226 [Gene_View]  chr3:121769761-121835079 [Contig_View]  IQCB1 [Vega]
ICGC DataPortalENSG00000173226
TCGA cBioPortalIQCB1
AceView (NCBI)IQCB1
Genatlas (Paris)IQCB1
WikiGenes9657
SOURCE (Princeton)IQCB1
Genetics Home Reference (NIH)IQCB1
Genomic and cartography
GoldenPath hg38 (UCSC)IQCB1  -     chr3:121769761-121835079 -  3q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IQCB1  -     3q13.33   [Description]    (hg19-Feb_2009)
EnsemblIQCB1 - 3q13.33 [CytoView hg19]  IQCB1 - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBIIQCB1 [Mapview hg19]  IQCB1 [Mapview hg38]
OMIM609237   609254   
Gene and transcription
Genbank (Entrez)AB062481 AL042102 AY714228 AY964667 AY964668
RefSeq transcript (Entrez)NM_001023570 NM_001023571 NM_001319107
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IQCB1
Cluster EST : UnigeneHs.604110 [ NCBI ]
CGAP (NCI)Hs.604110
Alternative Splicing GalleryENSG00000173226
Gene ExpressionIQCB1 [ NCBI-GEO ]   IQCB1 [ EBI - ARRAY_EXPRESS ]   IQCB1 [ SEEK ]   IQCB1 [ MEM ]
Gene Expression Viewer (FireBrowse)IQCB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9657
GTEX Portal (Tissue expression)IQCB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15051   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15051  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15051
Splice isoforms : SwissVarQ15051
PhosPhoSitePlusQ15051
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)ARM-type_fold    IQ_motif_EF-hand-BS    IQCB1    P-loop_NTPase   
Domain families : Pfam (Sanger)IQ (PF00612)   
Domain families : Pfam (NCBI)pfam00612   
Domain families : Smart (EMBL)IQ (SM00015)  
Conserved Domain (NCBI)IQCB1
DMDM Disease mutations9657
Blocks (Seattle)IQCB1
SuperfamilyQ15051
Human Protein AtlasENSG00000173226
Peptide AtlasQ15051
HPRD11049
IPIIPI00014255   IPI00186525   IPI00335453   IPI00946435   IPI00945187   IPI00789132   
Protein Interaction databases
DIP (DOE-UCLA)Q15051
IntAct (EBI)Q15051
FunCoupENSG00000173226
BioGRIDIQCB1
STRING (EMBL)IQCB1
ZODIACIQCB1
Ontologies - Pathways
QuickGOQ15051
Ontology : AmiGOphotoreceptor outer segment  protein binding  calmodulin binding  centrosome  centriole  cytosol  enzyme binding  photoreceptor connecting cilium  photoreceptor cell maintenance  maintenance of animal organ identity  cilium assembly  extracellular exosome  ciliary basal body docking  
Ontology : EGO-EBIphotoreceptor outer segment  protein binding  calmodulin binding  centrosome  centriole  cytosol  enzyme binding  photoreceptor connecting cilium  photoreceptor cell maintenance  maintenance of animal organ identity  cilium assembly  extracellular exosome  ciliary basal body docking  
NDEx NetworkIQCB1
Atlas of Cancer Signalling NetworkIQCB1
Wikipedia pathwaysIQCB1
Orthology - Evolution
OrthoDB9657
GeneTree (enSembl)ENSG00000173226
Phylogenetic Trees/Animal Genes : TreeFamIQCB1
HOVERGENQ15051
HOGENOMQ15051
Homologs : HomoloGeneIQCB1
Homology/Alignments : Family Browser (UCSC)IQCB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCB1
dbVarIQCB1
ClinVarIQCB1
1000_GenomesIQCB1 
Exome Variant ServerIQCB1
ExAC (Exome Aggregation Consortium)IQCB1 (select the gene name)
Genetic variants : HAPMAP9657
Genomic Variants (DGV)IQCB1 [DGVbeta]
DECIPHERIQCB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIQCB1 
Mutations
ICGC Data PortalIQCB1 
TCGA Data PortalIQCB1 
Broad Tumor PortalIQCB1
OASIS PortalIQCB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch IQCB1
DgiDB (Drug Gene Interaction Database)IQCB1
DoCM (Curated mutations)IQCB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCB1 (select a term)
intoGenIQCB1
Cancer3DIQCB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609237    609254   
Orphanet2824    3243   
MedgenIQCB1
Genetic Testing Registry IQCB1
NextProtQ15051 [Medical]
TSGene9657
GENETestsIQCB1
Target ValidationIQCB1
Huge Navigator IQCB1 [HugePedia]
snp3D : Map Gene to Disease9657
BioCentury BCIQIQCB1
ClinGenIQCB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9657
Chemical/Pharm GKB GenePA134869761
Clinical trialIQCB1
Miscellaneous
canSAR (ICR)IQCB1 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCB1
EVEXIQCB1
GoPubMedIQCB1
iHOPIQCB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:53:36 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.