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IQCC (IQ motif containing C)

Identity

Alias_symbol (synonym)FLJ10547
Other alias-
HGNC (Hugo) IQCC
LocusID (NCBI) 55721
Atlas_Id 40585
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 32671236 and ends at 32674288 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC28B (1p35.1) / IQCC (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IQCC   25545
Cards
Entrez_Gene (NCBI)IQCC  55721  IQ motif containing C
Aliases
GeneCards (Weizmann)IQCC
Ensembl hg19 (Hinxton)ENSG00000160051 [Gene_View]  chr1:32671236-32674288 [Contig_View]  IQCC [Vega]
Ensembl hg38 (Hinxton)ENSG00000160051 [Gene_View]  chr1:32671236-32674288 [Contig_View]  IQCC [Vega]
ICGC DataPortalENSG00000160051
TCGA cBioPortalIQCC
AceView (NCBI)IQCC
Genatlas (Paris)IQCC
WikiGenes55721
SOURCE (Princeton)IQCC
Genetics Home Reference (NIH)IQCC
Genomic and cartography
GoldenPath hg19 (UCSC)IQCC  -     chr1:32671236-32674288 +  1p35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IQCC  -     1p35.1   [Description]    (hg38-Dec_2013)
EnsemblIQCC - 1p35.1 [CytoView hg19]  IQCC - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIIQCC [Mapview hg19]  IQCC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001409 AK223272 AK299235 AK307853 BC029986
RefSeq transcript (Entrez)NM_001160042 NM_018134
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)IQCC
Cluster EST : UnigeneHs.274356 [ NCBI ]
CGAP (NCI)Hs.274356
Alternative Splicing GalleryENSG00000160051
Gene ExpressionIQCC [ NCBI-GEO ]   IQCC [ EBI - ARRAY_EXPRESS ]   IQCC [ SEEK ]   IQCC [ MEM ]
Gene Expression Viewer (FireBrowse)IQCC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55721
GTEX Portal (Tissue expression)IQCC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4KMZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4KMZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4KMZ1
Splice isoforms : SwissVarQ4KMZ1
PhosPhoSitePlusQ4KMZ1
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IQ (SM00015)  
Conserved Domain (NCBI)IQCC
DMDM Disease mutations55721
Blocks (Seattle)IQCC
SuperfamilyQ4KMZ1
Human Protein AtlasENSG00000160051
Peptide AtlasQ4KMZ1
HPRD07683
IPIIPI00018690   IPI00844471   IPI00930108   
Protein Interaction databases
DIP (DOE-UCLA)Q4KMZ1
IntAct (EBI)Q4KMZ1
FunCoupENSG00000160051
BioGRIDIQCC
STRING (EMBL)IQCC
ZODIACIQCC
Ontologies - Pathways
QuickGOQ4KMZ1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkIQCC
Atlas of Cancer Signalling NetworkIQCC
Wikipedia pathwaysIQCC
Orthology - Evolution
OrthoDB55721
GeneTree (enSembl)ENSG00000160051
Phylogenetic Trees/Animal Genes : TreeFamIQCC
HOVERGENQ4KMZ1
HOGENOMQ4KMZ1
Homologs : HomoloGeneIQCC
Homology/Alignments : Family Browser (UCSC)IQCC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCC
dbVarIQCC
ClinVarIQCC
1000_GenomesIQCC 
Exome Variant ServerIQCC
ExAC (Exome Aggregation Consortium)IQCC (select the gene name)
Genetic variants : HAPMAP55721
Genomic Variants (DGV)IQCC [DGVbeta]
DECIPHER (Syndromes)1:32671236-32674288  ENSG00000160051
CONAN: Copy Number AnalysisIQCC 
Mutations
ICGC Data PortalIQCC 
TCGA Data PortalIQCC 
Broad Tumor PortalIQCC
OASIS PortalIQCC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IQCC
DgiDB (Drug Gene Interaction Database)IQCC
DoCM (Curated mutations)IQCC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCC (select a term)
intoGenIQCC
Cancer3DIQCC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIQCC
Genetic Testing Registry IQCC
NextProtQ4KMZ1 [Medical]
TSGene55721
GENETestsIQCC
Huge Navigator IQCC [HugePedia]
snp3D : Map Gene to Disease55721
BioCentury BCIQIQCC
ClinGenIQCC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55721
Chemical/Pharm GKB GenePA134868161
Clinical trialIQCC
Miscellaneous
canSAR (ICR)IQCC (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCC
EVEXIQCC
GoPubMedIQCC
iHOPIQCC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:11:00 CET 2017

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