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IQCE (IQ motif containing E)

Identity

Alias_symbol (synonym)KIAA1023
Other alias1700028P05Rik
HGNC (Hugo) IQCE
LocusID (NCBI) 23288
Atlas_Id 64647
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 2558972 and ends at 2607562 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APOC1 (19q13.32) / IQCE (7p22.3)CD9 (12p13.31) / IQCE (7p22.3)FAM114A1 (4p14) / IQCE (7p22.3)
IQCE (7p22.3) / EIF3B (7p22.3)IQCE (7p22.3) / PPM1G (2p23.3)PSME1 (14q12) / IQCE (7p22.3)
VIM (10p13) / IQCE (7p22.3)FAM114A1 IQCECD9 IQCE
VIM IQCE

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IQCE   29171
Cards
Entrez_Gene (NCBI)IQCE  23288  IQ motif containing E
Aliases1700028P05Rik
GeneCards (Weizmann)IQCE
Ensembl hg19 (Hinxton)ENSG00000106012 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106012 [Gene_View]  chr7:2558972-2607562 [Contig_View]  IQCE [Vega]
ICGC DataPortalENSG00000106012
TCGA cBioPortalIQCE
AceView (NCBI)IQCE
Genatlas (Paris)IQCE
WikiGenes23288
SOURCE (Princeton)IQCE
Genetics Home Reference (NIH)IQCE
Genomic and cartography
GoldenPath hg38 (UCSC)IQCE  -     chr7:2558972-2607562 +  7p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IQCE  -     7p22.3   [Description]    (hg19-Feb_2009)
EnsemblIQCE - 7p22.3 [CytoView hg19]  IQCE - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBIIQCE [Mapview hg19]  IQCE [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB028946 AK092404 AK293372 AK302053 AK309646
RefSeq transcript (Entrez)NM_001100390 NM_001287499 NM_001287500 NM_001287501 NM_001287502 NM_152558
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IQCE
Cluster EST : UnigeneHs.520627 [ NCBI ]
CGAP (NCI)Hs.520627
Alternative Splicing GalleryENSG00000106012
Gene ExpressionIQCE [ NCBI-GEO ]   IQCE [ EBI - ARRAY_EXPRESS ]   IQCE [ SEEK ]   IQCE [ MEM ]
Gene Expression Viewer (FireBrowse)IQCE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23288
GTEX Portal (Tissue expression)IQCE
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IPM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IPM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IPM2
Splice isoforms : SwissVarQ6IPM2
PhosPhoSitePlusQ6IPM2
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS   
Domain families : Pfam (Sanger)IQ (PF00612)   
Domain families : Pfam (NCBI)pfam00612   
Domain families : Smart (EMBL)IQ (SM00015)  
Conserved Domain (NCBI)IQCE
DMDM Disease mutations23288
Blocks (Seattle)IQCE
SuperfamilyQ6IPM2
Human Protein AtlasENSG00000106012
Peptide AtlasQ6IPM2
HPRD11050
IPIIPI00419922   IPI00844042   IPI00843879   IPI00843929   IPI00902433   IPI00893750   IPI00893304   IPI00893429   
Protein Interaction databases
DIP (DOE-UCLA)Q6IPM2
IntAct (EBI)Q6IPM2
FunCoupENSG00000106012
BioGRIDIQCE
STRING (EMBL)IQCE
ZODIACIQCE
Ontologies - Pathways
QuickGOQ6IPM2
Ontology : AmiGOprotein binding  cilium  
Ontology : EGO-EBIprotein binding  cilium  
NDEx NetworkIQCE
Atlas of Cancer Signalling NetworkIQCE
Wikipedia pathwaysIQCE
Orthology - Evolution
OrthoDB23288
GeneTree (enSembl)ENSG00000106012
Phylogenetic Trees/Animal Genes : TreeFamIQCE
HOVERGENQ6IPM2
HOGENOMQ6IPM2
Homologs : HomoloGeneIQCE
Homology/Alignments : Family Browser (UCSC)IQCE
Gene fusions - Rearrangements
Fusion: TCGAFAM114A1 IQCE
Fusion: TCGACD9 IQCE
Fusion: TCGAVIM IQCE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCE
dbVarIQCE
ClinVarIQCE
1000_GenomesIQCE 
Exome Variant ServerIQCE
ExAC (Exome Aggregation Consortium)IQCE (select the gene name)
Genetic variants : HAPMAP23288
Genomic Variants (DGV)IQCE [DGVbeta]
DECIPHERIQCE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIQCE 
Mutations
ICGC Data PortalIQCE 
TCGA Data PortalIQCE 
Broad Tumor PortalIQCE
OASIS PortalIQCE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch IQCE
DgiDB (Drug Gene Interaction Database)IQCE
DoCM (Curated mutations)IQCE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCE (select a term)
intoGenIQCE
Cancer3DIQCE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIQCE
Genetic Testing Registry IQCE
NextProtQ6IPM2 [Medical]
TSGene23288
GENETestsIQCE
Target ValidationIQCE
Huge Navigator IQCE [HugePedia]
snp3D : Map Gene to Disease23288
BioCentury BCIQIQCE
ClinGenIQCE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23288
Chemical/Pharm GKB GenePA134894706
Clinical trialIQCE
Miscellaneous
canSAR (ICR)IQCE (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCE
EVEXIQCE
GoPubMedIQCE
iHOPIQCE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:17 CEST 2017

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