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IQCF1 (IQ motif containing F1)

Identity

Alias_symbol (synonym)MGC39725
Other alias-
HGNC (Hugo) IQCF1
LocusID (NCBI) 132141
Atlas_Id 64648
Location 3p21.2  [Link to chromosome band 3p21]
Location_base_pair Starts at 51894876 and ends at 51903370 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IQCF1   28607
Cards
Entrez_Gene (NCBI)IQCF1  132141  IQ motif containing F1
Aliases
GeneCards (Weizmann)IQCF1
Ensembl hg19 (Hinxton)ENSG00000173389 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173389 [Gene_View]  chr3:51894876-51903370 [Contig_View]  IQCF1 [Vega]
ICGC DataPortalENSG00000173389
TCGA cBioPortalIQCF1
AceView (NCBI)IQCF1
Genatlas (Paris)IQCF1
WikiGenes132141
SOURCE (Princeton)IQCF1
Genetics Home Reference (NIH)IQCF1
Genomic and cartography
GoldenPath hg38 (UCSC)IQCF1  -     chr3:51894876-51903370 -  3p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IQCF1  -     3p21.2   [Description]    (hg19-Feb_2009)
EnsemblIQCF1 - 3p21.2 [CytoView hg19]  IQCF1 - 3p21.2 [CytoView hg38]
Mapping of homologs : NCBIIQCF1 [Mapview hg19]  IQCF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131018 BC029595 BC034228 HQ448208
RefSeq transcript (Entrez)NM_152397
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IQCF1
Cluster EST : UnigeneHs.671210 [ NCBI ]
CGAP (NCI)Hs.671210
Alternative Splicing GalleryENSG00000173389
Gene ExpressionIQCF1 [ NCBI-GEO ]   IQCF1 [ EBI - ARRAY_EXPRESS ]   IQCF1 [ SEEK ]   IQCF1 [ MEM ]
Gene Expression Viewer (FireBrowse)IQCF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132141
GTEX Portal (Tissue expression)IQCF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6M8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6M8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6M8
Splice isoforms : SwissVarQ8N6M8
PhosPhoSitePlusQ8N6M8
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS   
Domain families : Pfam (Sanger)IQ (PF00612)   
Domain families : Pfam (NCBI)pfam00612   
Domain families : Smart (EMBL)IQ (SM00015)  
Conserved Domain (NCBI)IQCF1
DMDM Disease mutations132141
Blocks (Seattle)IQCF1
SuperfamilyQ8N6M8
Human Protein AtlasENSG00000173389
Peptide AtlasQ8N6M8
HPRD17155
IPIIPI00167037   IPI00167061   IPI00927363   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6M8
IntAct (EBI)Q8N6M8
FunCoupENSG00000173389
BioGRIDIQCF1
STRING (EMBL)IQCF1
ZODIACIQCF1
Ontologies - Pathways
QuickGOQ8N6M8
Ontology : AmiGOacrosomal vesicle  calmodulin binding  positive regulation of flagellated sperm motility involved in capacitation  positive regulation of acrosome reaction  positive regulation of acrosome reaction  
Ontology : EGO-EBIacrosomal vesicle  calmodulin binding  positive regulation of flagellated sperm motility involved in capacitation  positive regulation of acrosome reaction  positive regulation of acrosome reaction  
NDEx NetworkIQCF1
Atlas of Cancer Signalling NetworkIQCF1
Wikipedia pathwaysIQCF1
Orthology - Evolution
OrthoDB132141
GeneTree (enSembl)ENSG00000173389
Phylogenetic Trees/Animal Genes : TreeFamIQCF1
HOVERGENQ8N6M8
HOGENOMQ8N6M8
Homologs : HomoloGeneIQCF1
Homology/Alignments : Family Browser (UCSC)IQCF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCF1
dbVarIQCF1
ClinVarIQCF1
1000_GenomesIQCF1 
Exome Variant ServerIQCF1
ExAC (Exome Aggregation Consortium)IQCF1 (select the gene name)
Genetic variants : HAPMAP132141
Genomic Variants (DGV)IQCF1 [DGVbeta]
DECIPHERIQCF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIQCF1 
Mutations
ICGC Data PortalIQCF1 
TCGA Data PortalIQCF1 
Broad Tumor PortalIQCF1
OASIS PortalIQCF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IQCF1
DgiDB (Drug Gene Interaction Database)IQCF1
DoCM (Curated mutations)IQCF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCF1 (select a term)
intoGenIQCF1
Cancer3DIQCF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIQCF1
Genetic Testing Registry IQCF1
NextProtQ8N6M8 [Medical]
TSGene132141
GENETestsIQCF1
Target ValidationIQCF1
Huge Navigator IQCF1 [HugePedia]
snp3D : Map Gene to Disease132141
BioCentury BCIQIQCF1
ClinGenIQCF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132141
Chemical/Pharm GKB GenePA134895829
Clinical trialIQCF1
Miscellaneous
canSAR (ICR)IQCF1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCF1
EVEXIQCF1
GoPubMedIQCF1
iHOPIQCF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:18 CEST 2017

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