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IQCF2 (IQ motif containing F2)

Identity

Other alias-
HGNC (Hugo) IQCF2
LocusID (NCBI) 389123
Atlas_Id 64649
Location 3p21.2  [Link to chromosome band 3p21]
Location_base_pair Starts at 51895645 and ends at 51897440 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IQCF2   31815
Cards
Entrez_Gene (NCBI)IQCF2  389123  IQ motif containing F2
Aliases
GeneCards (Weizmann)IQCF2
Ensembl hg19 (Hinxton)ENSG00000184345 [Gene_View]  chr3:51895645-51897440 [Contig_View]  IQCF2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184345 [Gene_View]  chr3:51895645-51897440 [Contig_View]  IQCF2 [Vega]
ICGC DataPortalENSG00000184345
TCGA cBioPortalIQCF2
AceView (NCBI)IQCF2
Genatlas (Paris)IQCF2
WikiGenes389123
SOURCE (Princeton)IQCF2
Genetics Home Reference (NIH)IQCF2
Genomic and cartography
GoldenPath hg19 (UCSC)IQCF2  -     chr3:51895645-51897440 +  3p21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IQCF2  -     3p21.2   [Description]    (hg38-Dec_2013)
EnsemblIQCF2 - 3p21.2 [CytoView hg19]  IQCF2 - 3p21.2 [CytoView hg38]
Mapping of homologs : NCBIIQCF2 [Mapview hg19]  IQCF2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128883 BC040047 HQ448598
RefSeq transcript (Entrez)NM_203424
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)IQCF2
Cluster EST : UnigeneHs.412294 [ NCBI ]
CGAP (NCI)Hs.412294
Alternative Splicing GalleryENSG00000184345
Gene ExpressionIQCF2 [ NCBI-GEO ]   IQCF2 [ EBI - ARRAY_EXPRESS ]   IQCF2 [ SEEK ]   IQCF2 [ MEM ]
Gene Expression Viewer (FireBrowse)IQCF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389123
GTEX Portal (Tissue expression)IQCF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXL9
Splice isoforms : SwissVarQ8IXL9
PhosPhoSitePlusQ8IXL9
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS   
Domain families : Pfam (Sanger)IQ (PF00612)   
Domain families : Pfam (NCBI)pfam00612   
Domain families : Smart (EMBL)IQ (SM00015)  
Conserved Domain (NCBI)IQCF2
DMDM Disease mutations389123
Blocks (Seattle)IQCF2
SuperfamilyQ8IXL9
Human Protein AtlasENSG00000184345
Peptide AtlasQ8IXL9
HPRD13745
IPIIPI00217551   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXL9
IntAct (EBI)Q8IXL9
FunCoupENSG00000184345
BioGRIDIQCF2
STRING (EMBL)IQCF2
ZODIACIQCF2
Ontologies - Pathways
QuickGOQ8IXL9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkIQCF2
Atlas of Cancer Signalling NetworkIQCF2
Wikipedia pathwaysIQCF2
Orthology - Evolution
OrthoDB389123
GeneTree (enSembl)ENSG00000184345
Phylogenetic Trees/Animal Genes : TreeFamIQCF2
HOVERGENQ8IXL9
HOGENOMQ8IXL9
Homologs : HomoloGeneIQCF2
Homology/Alignments : Family Browser (UCSC)IQCF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCF2
dbVarIQCF2
ClinVarIQCF2
1000_GenomesIQCF2 
Exome Variant ServerIQCF2
ExAC (Exome Aggregation Consortium)IQCF2 (select the gene name)
Genetic variants : HAPMAP389123
Genomic Variants (DGV)IQCF2 [DGVbeta]
DECIPHER (Syndromes)3:51895645-51897440  ENSG00000184345
CONAN: Copy Number AnalysisIQCF2 
Mutations
ICGC Data PortalIQCF2 
TCGA Data PortalIQCF2 
Broad Tumor PortalIQCF2
OASIS PortalIQCF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IQCF2
DgiDB (Drug Gene Interaction Database)IQCF2
DoCM (Curated mutations)IQCF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCF2 (select a term)
intoGenIQCF2
Cancer3DIQCF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIQCF2
Genetic Testing Registry IQCF2
NextProtQ8IXL9 [Medical]
TSGene389123
GENETestsIQCF2
Huge Navigator IQCF2 [HugePedia]
snp3D : Map Gene to Disease389123
BioCentury BCIQIQCF2
ClinGenIQCF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389123
Chemical/Pharm GKB GenePA134900355
Clinical trialIQCF2
Miscellaneous
canSAR (ICR)IQCF2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCF2
EVEXIQCF2
GoPubMedIQCF2
iHOPIQCF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:58 CET 2017

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