Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IQCF5 (IQ motif containing F5)

Identity

Other alias-
HGNC (Hugo) IQCF5
LocusID (NCBI) 389124
Atlas_Id 64652
Location 3p21.2  [Link to chromosome band 3p21]
Location_base_pair Starts at 51873721 and ends at 51875584 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IQCF5   35159
Cards
Entrez_Gene (NCBI)IQCF5  389124  IQ motif containing F5
Aliases
GeneCards (Weizmann)IQCF5
Ensembl hg19 (Hinxton)ENSG00000214681 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214681 [Gene_View]  chr3:51873721-51875584 [Contig_View]  IQCF5 [Vega]
ICGC DataPortalENSG00000214681
TCGA cBioPortalIQCF5
AceView (NCBI)IQCF5
Genatlas (Paris)IQCF5
WikiGenes389124
SOURCE (Princeton)IQCF5
Genetics Home Reference (NIH)IQCF5
Genomic and cartography
GoldenPath hg38 (UCSC)IQCF5  -     chr3:51873721-51875584 -  3p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IQCF5  -     3p21.2   [Description]    (hg19-Feb_2009)
EnsemblIQCF5 - 3p21.2 [CytoView hg19]  IQCF5 - 3p21.2 [CytoView hg38]
Mapping of homologs : NCBIIQCF5 [Mapview hg19]  IQCF5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW138546 BX106781
RefSeq transcript (Entrez)NM_001145059
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IQCF5
Cluster EST : UnigeneHs.666604 [ NCBI ]
CGAP (NCI)Hs.666604
Alternative Splicing GalleryENSG00000214681
Gene ExpressionIQCF5 [ NCBI-GEO ]   IQCF5 [ EBI - ARRAY_EXPRESS ]   IQCF5 [ SEEK ]   IQCF5 [ MEM ]
Gene Expression Viewer (FireBrowse)IQCF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389124
GTEX Portal (Tissue expression)IQCF5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MTL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MTL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MTL0
Splice isoforms : SwissVarA8MTL0
PhosPhoSitePlusA8MTL0
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS   
Domain families : Pfam (Sanger)IQ (PF00612)   
Domain families : Pfam (NCBI)pfam00612   
Domain families : Smart (EMBL)IQ (SM00015)  
Conserved Domain (NCBI)IQCF5
DMDM Disease mutations389124
Blocks (Seattle)IQCF5
SuperfamilyA8MTL0
Human Protein AtlasENSG00000214681
Peptide AtlasA8MTL0
IPIIPI00556179   IPI01015032   
Protein Interaction databases
DIP (DOE-UCLA)A8MTL0
IntAct (EBI)A8MTL0
FunCoupENSG00000214681
BioGRIDIQCF5
STRING (EMBL)IQCF5
ZODIACIQCF5
Ontologies - Pathways
QuickGOA8MTL0
Ontology : AmiGOcalmodulin binding  
Ontology : EGO-EBIcalmodulin binding  
NDEx NetworkIQCF5
Atlas of Cancer Signalling NetworkIQCF5
Wikipedia pathwaysIQCF5
Orthology - Evolution
OrthoDB389124
GeneTree (enSembl)ENSG00000214681
Phylogenetic Trees/Animal Genes : TreeFamIQCF5
HOVERGENA8MTL0
HOGENOMA8MTL0
Homologs : HomoloGeneIQCF5
Homology/Alignments : Family Browser (UCSC)IQCF5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCF5
dbVarIQCF5
ClinVarIQCF5
1000_GenomesIQCF5 
Exome Variant ServerIQCF5
ExAC (Exome Aggregation Consortium)IQCF5 (select the gene name)
Genetic variants : HAPMAP389124
Genomic Variants (DGV)IQCF5 [DGVbeta]
DECIPHERIQCF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIQCF5 
Mutations
ICGC Data PortalIQCF5 
TCGA Data PortalIQCF5 
Broad Tumor PortalIQCF5
OASIS PortalIQCF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCF5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IQCF5
DgiDB (Drug Gene Interaction Database)IQCF5
DoCM (Curated mutations)IQCF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCF5 (select a term)
intoGenIQCF5
Cancer3DIQCF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIQCF5
Genetic Testing Registry IQCF5
NextProtA8MTL0 [Medical]
TSGene389124
GENETestsIQCF5
Target ValidationIQCF5
Huge Navigator IQCF5 [HugePedia]
snp3D : Map Gene to Disease389124
BioCentury BCIQIQCF5
ClinGenIQCF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389124
Chemical/Pharm GKB GenePA164721062
Clinical trialIQCF5
Miscellaneous
canSAR (ICR)IQCF5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCF5
EVEXIQCF5
GoPubMedIQCF5
iHOPIQCF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:11:18 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.