Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IQCG (IQ motif containing G)

Identity

Alias_symbol (synonym)DKFZp434B227
DRC9
CFAP122
Other alias
HGNC (Hugo) IQCG
LocusID (NCBI) 84223
Atlas_Id 53011
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 197889075 and ends at 197949925 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACAP2 (3q29) / IQCG (3q29)AKAP13 (15q25.3) / IQCG (3q29)DOCK7 (1p31.3) / IQCG (3q29)
FN1 (2q35) / IQCG (3q29)IQCG (3q29) / BPTF (17q24.2)IQCG (3q29) / DOCK7 (1p31.3)
IQCG (3q29) / ENO1 (1p36.23)IQCG (3q29) / LOC100505817 (18q22.3)IQCG (3q29) / ZNF391 (6p22.1)
NUP98 (11p15.4) / IQCG (3q29)USP39 (2p11.2) / IQCG (3q29)VIM (10p13) / IQCG (3q29)
ZNF391 (6p22.1) / IQCG (3q29)ACAP2 3q29 / IQCG 3q29

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(3;11)(q29;p15) NUP98/IQCG


External links

Nomenclature
HGNC (Hugo)IQCG   25251
Cards
Entrez_Gene (NCBI)IQCG  84223  IQ motif containing G
AliasesCFAP122; DRC9
GeneCards (Weizmann)IQCG
Ensembl hg19 (Hinxton)ENSG00000114473 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114473 [Gene_View]  chr3:197889075-197949925 [Contig_View]  IQCG [Vega]
ICGC DataPortalENSG00000114473
TCGA cBioPortalIQCG
AceView (NCBI)IQCG
Genatlas (Paris)IQCG
WikiGenes84223
SOURCE (Princeton)IQCG
Genetics Home Reference (NIH)IQCG
Genomic and cartography
GoldenPath hg38 (UCSC)IQCG  -     chr3:197889075-197949925 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IQCG  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblIQCG - 3q29 [CytoView hg19]  IQCG - 3q29 [CytoView hg38]
Mapping of homologs : NCBIIQCG [Mapview hg19]  IQCG [Mapview hg38]
OMIM612477   
Gene and transcription
Genbank (Entrez)AI564330 AK021729 AK027224 AK095094 AL136889
RefSeq transcript (Entrez)NM_001134435 NM_001323027 NM_001323028 NM_001323029 NM_001323030 NM_032263
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IQCG
Cluster EST : UnigeneHs.591675 [ NCBI ]
CGAP (NCI)Hs.591675
Alternative Splicing GalleryENSG00000114473
Gene ExpressionIQCG [ NCBI-GEO ]   IQCG [ EBI - ARRAY_EXPRESS ]   IQCG [ SEEK ]   IQCG [ MEM ]
Gene Expression Viewer (FireBrowse)IQCG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84223
GTEX Portal (Tissue expression)IQCG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H095   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H095  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H095
Splice isoforms : SwissVarQ9H095
PhosPhoSitePlusQ9H095
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS   
Domain families : Pfam (Sanger)IQ (PF00612)   
Domain families : Pfam (NCBI)pfam00612   
Conserved Domain (NCBI)IQCG
DMDM Disease mutations84223
Blocks (Seattle)IQCG
PDB (SRS)4LZX    4M1L   
PDB (PDBSum)4LZX    4M1L   
PDB (IMB)4LZX    4M1L   
PDB (RSDB)4LZX    4M1L   
Structural Biology KnowledgeBase4LZX    4M1L   
SCOP (Structural Classification of Proteins)4LZX    4M1L   
CATH (Classification of proteins structures)4LZX    4M1L   
SuperfamilyQ9H095
Human Protein AtlasENSG00000114473
Peptide AtlasQ9H095
HPRD13746
IPIIPI00794993   IPI00031047   IPI00927436   IPI00927716   IPI00927935   
Protein Interaction databases
DIP (DOE-UCLA)Q9H095
IntAct (EBI)Q9H095
FunCoupENSG00000114473
BioGRIDIQCG
STRING (EMBL)IQCG
ZODIACIQCG
Ontologies - Pathways
QuickGOQ9H095
Ontology : AmiGOmanchette  calmodulin binding  cytoplasm  spermatid development  sperm axoneme assembly  Hsp70 protein binding  motile cilium  sperm flagellum  extracellular exosome  
Ontology : EGO-EBImanchette  calmodulin binding  cytoplasm  spermatid development  sperm axoneme assembly  Hsp70 protein binding  motile cilium  sperm flagellum  extracellular exosome  
NDEx NetworkIQCG
Atlas of Cancer Signalling NetworkIQCG
Wikipedia pathwaysIQCG
Orthology - Evolution
OrthoDB84223
GeneTree (enSembl)ENSG00000114473
Phylogenetic Trees/Animal Genes : TreeFamIQCG
HOVERGENQ9H095
HOGENOMQ9H095
Homologs : HomoloGeneIQCG
Homology/Alignments : Family Browser (UCSC)IQCG
Gene fusions - Rearrangements
Fusion : MitelmanNUP98/IQCG [11p15.4/3q29]  [t(3;11)(q29;p15)]  
Fusion: TCGAACAP2 3q29 IQCG 3q29 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCG
dbVarIQCG
ClinVarIQCG
1000_GenomesIQCG 
Exome Variant ServerIQCG
ExAC (Exome Aggregation Consortium)IQCG (select the gene name)
Genetic variants : HAPMAP84223
Genomic Variants (DGV)IQCG [DGVbeta]
DECIPHERIQCG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIQCG 
Mutations
ICGC Data PortalIQCG 
TCGA Data PortalIQCG 
Broad Tumor PortalIQCG
OASIS PortalIQCG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IQCG
DgiDB (Drug Gene Interaction Database)IQCG
DoCM (Curated mutations)IQCG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCG (select a term)
intoGenIQCG
Cancer3DIQCG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612477   
Orphanet
MedgenIQCG
Genetic Testing Registry IQCG
NextProtQ9H095 [Medical]
TSGene84223
GENETestsIQCG
Target ValidationIQCG
Huge Navigator IQCG [HugePedia]
snp3D : Map Gene to Disease84223
BioCentury BCIQIQCG
ClinGenIQCG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84223
Chemical/Pharm GKB GenePA134919040
Clinical trialIQCG
Miscellaneous
canSAR (ICR)IQCG (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCG
EVEXIQCG
GoPubMedIQCG
iHOPIQCG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:13:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.