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IQCH (IQ motif containing H)

Identity

Alias_symbol (synonym)FLJ12476
Other aliasNYDSP5
HGNC (Hugo) IQCH
LocusID (NCBI) 64799
Atlas_Id 64655
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 67254800 and ends at 67501804 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IQCH (15q23) / IQCH (15q23)LRRC28 (15q26.3) / IQCH (15q23)MAP2K5 (15q23) / IQCH (15q23)
RPTOR (17q25.3) / IQCH (15q23)RPTOR IQCHMAP2K5 IQCH

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IQCH   25721
Cards
Entrez_Gene (NCBI)IQCH  64799  IQ motif containing H
AliasesNYDSP5
GeneCards (Weizmann)IQCH
Ensembl hg19 (Hinxton)ENSG00000103599 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103599 [Gene_View]  chr15:67254800-67501804 [Contig_View]  IQCH [Vega]
ICGC DataPortalENSG00000103599
TCGA cBioPortalIQCH
AceView (NCBI)IQCH
Genatlas (Paris)IQCH
WikiGenes64799
SOURCE (Princeton)IQCH
Genetics Home Reference (NIH)IQCH
Genomic and cartography
GoldenPath hg38 (UCSC)IQCH  -     chr15:67254800-67501804 +  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IQCH  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblIQCH - 15q23 [CytoView hg19]  IQCH - 15q23 [CytoView hg38]
Mapping of homologs : NCBIIQCH [Mapview hg19]  IQCH [Mapview hg38]
OMIM612523   
Gene and transcription
Genbank (Entrez)AK022538 AK292478 AK304303 AL133556 AY014282
RefSeq transcript (Entrez)NM_001031715 NM_001284347 NM_001284348 NM_001284349 NM_001322470 NM_001322471 NM_001322472 NM_001322473 NM_001322474 NM_001322475 NM_022784
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IQCH
Cluster EST : UnigeneHs.657894 [ NCBI ]
CGAP (NCI)Hs.657894
Alternative Splicing GalleryENSG00000103599
Gene ExpressionIQCH [ NCBI-GEO ]   IQCH [ EBI - ARRAY_EXPRESS ]   IQCH [ SEEK ]   IQCH [ MEM ]
Gene Expression Viewer (FireBrowse)IQCH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64799
GTEX Portal (Tissue expression)IQCH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VS3
Splice isoforms : SwissVarQ86VS3
PhosPhoSitePlusQ86VS3
Domaine pattern : Prosite (Expaxy)IQ (PS50096)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)IQCH
DMDM Disease mutations64799
Blocks (Seattle)IQCH
SuperfamilyQ86VS3
Human Protein AtlasENSG00000103599
Peptide AtlasQ86VS3
HPRD07773
IPIIPI00336020   IPI00009722   IPI00386151   IPI00790231   IPI00793222   IPI01010311   IPI01010704   IPI01015165   
Protein Interaction databases
DIP (DOE-UCLA)Q86VS3
IntAct (EBI)Q86VS3
FunCoupENSG00000103599
BioGRIDIQCH
STRING (EMBL)IQCH
ZODIACIQCH
Ontologies - Pathways
QuickGOQ86VS3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkIQCH
Atlas of Cancer Signalling NetworkIQCH
Wikipedia pathwaysIQCH
Orthology - Evolution
OrthoDB64799
GeneTree (enSembl)ENSG00000103599
Phylogenetic Trees/Animal Genes : TreeFamIQCH
HOVERGENQ86VS3
HOGENOMQ86VS3
Homologs : HomoloGeneIQCH
Homology/Alignments : Family Browser (UCSC)IQCH
Gene fusions - Rearrangements
Fusion: TCGARPTOR IQCH
Fusion: TCGAMAP2K5 IQCH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCH
dbVarIQCH
ClinVarIQCH
1000_GenomesIQCH 
Exome Variant ServerIQCH
ExAC (Exome Aggregation Consortium)IQCH (select the gene name)
Genetic variants : HAPMAP64799
Genomic Variants (DGV)IQCH [DGVbeta]
DECIPHERIQCH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIQCH 
Mutations
ICGC Data PortalIQCH 
TCGA Data PortalIQCH 
Broad Tumor PortalIQCH
OASIS PortalIQCH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IQCH
DgiDB (Drug Gene Interaction Database)IQCH
DoCM (Curated mutations)IQCH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCH (select a term)
intoGenIQCH
Cancer3DIQCH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612523   
Orphanet
MedgenIQCH
Genetic Testing Registry IQCH
NextProtQ86VS3 [Medical]
TSGene64799
GENETestsIQCH
Huge Navigator IQCH [HugePedia]
snp3D : Map Gene to Disease64799
BioCentury BCIQIQCH
ClinGenIQCH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64799
Chemical/Pharm GKB GenePA142671654
Clinical trialIQCH
Miscellaneous
canSAR (ICR)IQCH (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCH
EVEXIQCH
GoPubMedIQCH
iHOPIQCH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:17:04 CEST 2017

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