Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IQCJ (IQ motif containing J)

Identity

Other alias-
HGNC (Hugo) IQCJ
LocusID (NCBI) 654502
Atlas_Id 53012
Location 3q25.32  [Link to chromosome band 3q25]
Location_base_pair Starts at 158787041 and ends at 158984096 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IQCJ (3q25.32) / BCHE (3q26.1)IQCJ (3q25.32) / SCHIP1 (3q25.32)RPL34 (4q25) / IQCJ (3q25.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)IQCJ   32406
Cards
Entrez_Gene (NCBI)IQCJ  654502  IQ motif containing J
Aliases
GeneCards (Weizmann)IQCJ
Ensembl hg19 (Hinxton)ENSG00000214216 [Gene_View]  chr3:158787041-158984096 [Contig_View]  IQCJ [Vega]
Ensembl hg38 (Hinxton)ENSG00000214216 [Gene_View]  chr3:158787041-158984096 [Contig_View]  IQCJ [Vega]
ICGC DataPortalENSG00000214216
TCGA cBioPortalIQCJ
AceView (NCBI)IQCJ
Genatlas (Paris)IQCJ
WikiGenes654502
SOURCE (Princeton)IQCJ
Genetics Home Reference (NIH)IQCJ
Genomic and cartography
GoldenPath hg19 (UCSC)IQCJ  -     chr3:158787041-158984096 +  3q25.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IQCJ  -     3q25.32   [Description]    (hg38-Dec_2013)
EnsemblIQCJ - 3q25.32 [CytoView hg19]  IQCJ - 3q25.32 [CytoView hg38]
Mapping of homologs : NCBIIQCJ [Mapview hg19]  IQCJ [Mapview hg38]
OMIM611622   
Gene and transcription
Genbank (Entrez)AK309049 BC137464 BC137469 BC144658 DA305468
RefSeq transcript (Entrez)NM_001042705 NM_001042706 NM_001197100
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)IQCJ
Cluster EST : UnigeneHs.570685 [ NCBI ]
CGAP (NCI)Hs.570685
Alternative Splicing GalleryENSG00000214216
Gene ExpressionIQCJ [ NCBI-GEO ]   IQCJ [ EBI - ARRAY_EXPRESS ]   IQCJ [ SEEK ]   IQCJ [ MEM ]
Gene Expression Viewer (FireBrowse)IQCJ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)654502
GTEX Portal (Tissue expression)IQCJ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1A5X6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1A5X6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1A5X6
Splice isoforms : SwissVarQ1A5X6
PhosPhoSitePlusQ1A5X6
Domains : Interpro (EBI)IQCJ-SCHIP1   
Domain families : Pfam (Sanger)IQCJ-SCHIP1 (PF15157)   
Domain families : Pfam (NCBI)pfam15157   
Conserved Domain (NCBI)IQCJ
DMDM Disease mutations654502
Blocks (Seattle)IQCJ
SuperfamilyQ1A5X6
Human Protein AtlasENSG00000214216
Peptide AtlasQ1A5X6
IPIIPI00761008   IPI00760977   IPI00922236   
Protein Interaction databases
DIP (DOE-UCLA)Q1A5X6
IntAct (EBI)Q1A5X6
FunCoupENSG00000214216
BioGRIDIQCJ
STRING (EMBL)IQCJ
ZODIACIQCJ
Ontologies - Pathways
QuickGOQ1A5X6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkIQCJ
Atlas of Cancer Signalling NetworkIQCJ
Wikipedia pathwaysIQCJ
Orthology - Evolution
OrthoDB654502
GeneTree (enSembl)ENSG00000214216
Phylogenetic Trees/Animal Genes : TreeFamIQCJ
HOVERGENQ1A5X6
HOGENOMQ1A5X6
Homologs : HomoloGeneIQCJ
Homology/Alignments : Family Browser (UCSC)IQCJ
Gene fusions - Rearrangements
Fusion : MitelmanIQCJ/BCHE [3q25.32/3q26.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCJ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCJ
dbVarIQCJ
ClinVarIQCJ
1000_GenomesIQCJ 
Exome Variant ServerIQCJ
ExAC (Exome Aggregation Consortium)IQCJ (select the gene name)
Genetic variants : HAPMAP654502
Genomic Variants (DGV)IQCJ [DGVbeta]
DECIPHER (Syndromes)3:158787041-158984096  ENSG00000214216
CONAN: Copy Number AnalysisIQCJ 
Mutations
ICGC Data PortalIQCJ 
TCGA Data PortalIQCJ 
Broad Tumor PortalIQCJ
OASIS PortalIQCJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCJ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCJ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IQCJ
DgiDB (Drug Gene Interaction Database)IQCJ
DoCM (Curated mutations)IQCJ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCJ (select a term)
intoGenIQCJ
Cancer3DIQCJ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611622   
Orphanet
MedgenIQCJ
Genetic Testing Registry IQCJ
NextProtQ1A5X6 [Medical]
TSGene654502
GENETestsIQCJ
Huge Navigator IQCJ [HugePedia]
snp3D : Map Gene to Disease654502
BioCentury BCIQIQCJ
ClinGenIQCJ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654502
Chemical/Pharm GKB GenePA143485504
Clinical trialIQCJ
Miscellaneous
canSAR (ICR)IQCJ (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCJ
EVEXIQCJ
GoPubMedIQCJ
iHOPIQCJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:11:01 CET 2017

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