Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IQCJ (IQ motif containing J)

Identity

Other alias-
HGNC (Hugo) IQCJ
LocusID (NCBI) 654502
Atlas_Id 53012
Location 3q25.32  [Link to chromosome band 3q25]
Location_base_pair Starts at 159069252 and ends at 159266307 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IQCJ (3q25.32) / BCHE (3q26.1)IQCJ (3q25.32) / SCHIP1 (3q25.32)RPL34 (4q25) / IQCJ (3q25.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)IQCJ   32406
Cards
Entrez_Gene (NCBI)IQCJ  654502  IQ motif containing J
Aliases
GeneCards (Weizmann)IQCJ
Ensembl hg19 (Hinxton)ENSG00000214216 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214216 [Gene_View]  chr3:159069252-159266307 [Contig_View]  IQCJ [Vega]
ICGC DataPortalENSG00000214216
TCGA cBioPortalIQCJ
AceView (NCBI)IQCJ
Genatlas (Paris)IQCJ
WikiGenes654502
SOURCE (Princeton)IQCJ
Genetics Home Reference (NIH)IQCJ
Genomic and cartography
GoldenPath hg38 (UCSC)IQCJ  -     chr3:159069252-159266307 +  3q25.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IQCJ  -     3q25.32   [Description]    (hg19-Feb_2009)
EnsemblIQCJ - 3q25.32 [CytoView hg19]  IQCJ - 3q25.32 [CytoView hg38]
Mapping of homologs : NCBIIQCJ [Mapview hg19]  IQCJ [Mapview hg38]
OMIM611622   
Gene and transcription
Genbank (Entrez)AK309049 BC137464 BC137469 BC144658 DA305468
RefSeq transcript (Entrez)NM_001042705 NM_001042706 NM_001197100
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IQCJ
Cluster EST : UnigeneHs.570685 [ NCBI ]
CGAP (NCI)Hs.570685
Alternative Splicing GalleryENSG00000214216
Gene ExpressionIQCJ [ NCBI-GEO ]   IQCJ [ EBI - ARRAY_EXPRESS ]   IQCJ [ SEEK ]   IQCJ [ MEM ]
Gene Expression Viewer (FireBrowse)IQCJ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)654502
GTEX Portal (Tissue expression)IQCJ
Human Protein AtlasENSG00000214216-IQCJ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1A5X6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1A5X6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1A5X6
Splice isoforms : SwissVarQ1A5X6
PhosPhoSitePlusQ1A5X6
Domains : Interpro (EBI)IQCJ-SCHIP1   
Domain families : Pfam (Sanger)IQCJ-SCHIP1 (PF15157)   
Domain families : Pfam (NCBI)pfam15157   
Conserved Domain (NCBI)IQCJ
DMDM Disease mutations654502
Blocks (Seattle)IQCJ
SuperfamilyQ1A5X6
Human Protein Atlas [tissue]ENSG00000214216-IQCJ [tissue]
Peptide AtlasQ1A5X6
IPIIPI00761008   IPI00760977   IPI00922236   
Protein Interaction databases
DIP (DOE-UCLA)Q1A5X6
IntAct (EBI)Q1A5X6
FunCoupENSG00000214216
BioGRIDIQCJ
STRING (EMBL)IQCJ
ZODIACIQCJ
Ontologies - Pathways
QuickGOQ1A5X6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkIQCJ
Atlas of Cancer Signalling NetworkIQCJ
Wikipedia pathwaysIQCJ
Orthology - Evolution
OrthoDB654502
GeneTree (enSembl)ENSG00000214216
Phylogenetic Trees/Animal Genes : TreeFamIQCJ
HOVERGENQ1A5X6
HOGENOMQ1A5X6
Homologs : HomoloGeneIQCJ
Homology/Alignments : Family Browser (UCSC)IQCJ
Gene fusions - Rearrangements
Fusion : MitelmanIQCJ/BCHE [3q25.32/3q26.1]  
Tumor Fusion PortalIQCJ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIQCJ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IQCJ
dbVarIQCJ
ClinVarIQCJ
1000_GenomesIQCJ 
Exome Variant ServerIQCJ
ExAC (Exome Aggregation Consortium)ENSG00000214216
GNOMAD BrowserENSG00000214216
Genetic variants : HAPMAP654502
Genomic Variants (DGV)IQCJ [DGVbeta]
DECIPHERIQCJ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIQCJ 
Mutations
ICGC Data PortalIQCJ 
TCGA Data PortalIQCJ 
Broad Tumor PortalIQCJ
OASIS PortalIQCJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIQCJ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIQCJ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IQCJ
DgiDB (Drug Gene Interaction Database)IQCJ
DoCM (Curated mutations)IQCJ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IQCJ (select a term)
intoGenIQCJ
Cancer3DIQCJ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611622   
Orphanet
DisGeNETIQCJ
MedgenIQCJ
Genetic Testing Registry IQCJ
NextProtQ1A5X6 [Medical]
TSGene654502
GENETestsIQCJ
Target ValidationIQCJ
Huge Navigator IQCJ [HugePedia]
snp3D : Map Gene to Disease654502
BioCentury BCIQIQCJ
ClinGenIQCJ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654502
Chemical/Pharm GKB GenePA143485504
Clinical trialIQCJ
Miscellaneous
canSAR (ICR)IQCJ (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIQCJ
EVEXIQCJ
GoPubMedIQCJ
iHOPIQCJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:18:02 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.