Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IRAK1BP1 (interleukin 1 receptor associated kinase 1 binding protein 1)

Identity

Alias_symbol (synonym)AIP70
SIMPL
Other alias
HGNC (Hugo) IRAK1BP1
LocusID (NCBI) 134728
Atlas_Id 64661
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 78867544 and ends at 78900966 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IRAK1BP1 (6q14.1) / IRAK1BP1 (6q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IRAK1BP1   17368
Cards
Entrez_Gene (NCBI)IRAK1BP1  134728  interleukin 1 receptor associated kinase 1 binding protein 1
AliasesAIP70; SIMPL
GeneCards (Weizmann)IRAK1BP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:78867544-78900966 [Contig_View]  IRAK1BP1 [Vega]
TCGA cBioPortalIRAK1BP1
AceView (NCBI)IRAK1BP1
Genatlas (Paris)IRAK1BP1
WikiGenes134728
SOURCE (Princeton)IRAK1BP1
Genetics Home Reference (NIH)IRAK1BP1
Genomic and cartography
GoldenPath hg38 (UCSC)IRAK1BP1  -     chr6:78867544-78900966 +  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IRAK1BP1  -     6q14.1   [Description]    (hg19-Feb_2009)
EnsemblIRAK1BP1 - 6q14.1 [CytoView hg19]  IRAK1BP1 - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBIIRAK1BP1 [Mapview hg19]  IRAK1BP1 [Mapview hg38]
OMIM615375   
Gene and transcription
Genbank (Entrez)AK096861 AK098678 AK309003 BC112253 BC112255
RefSeq transcript (Entrez)NM_001010844
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IRAK1BP1
Cluster EST : UnigeneHs.656212 [ NCBI ]
CGAP (NCI)Hs.656212
Gene ExpressionIRAK1BP1 [ NCBI-GEO ]   IRAK1BP1 [ EBI - ARRAY_EXPRESS ]   IRAK1BP1 [ SEEK ]   IRAK1BP1 [ MEM ]
Gene Expression Viewer (FireBrowse)IRAK1BP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134728
GTEX Portal (Tissue expression)IRAK1BP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VVH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VVH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VVH5
Splice isoforms : SwissVarQ5VVH5
PhosPhoSitePlusQ5VVH5
Domains : Interpro (EBI)DUF541    IRAK1BP1   
Domain families : Pfam (Sanger)SIMPL (PF04402)   
Domain families : Pfam (NCBI)pfam04402   
Conserved Domain (NCBI)IRAK1BP1
DMDM Disease mutations134728
Blocks (Seattle)IRAK1BP1
SuperfamilyQ5VVH5
Peptide AtlasQ5VVH5
HPRD17157
IPIIPI00477667   
Protein Interaction databases
DIP (DOE-UCLA)Q5VVH5
IntAct (EBI)Q5VVH5
BioGRIDIRAK1BP1
STRING (EMBL)IRAK1BP1
ZODIACIRAK1BP1
Ontologies - Pathways
QuickGOQ5VVH5
Ontology : AmiGOprotein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  immune response  I-kappaB kinase/NF-kappaB signaling  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  immune response  I-kappaB kinase/NF-kappaB signaling  
NDEx NetworkIRAK1BP1
Atlas of Cancer Signalling NetworkIRAK1BP1
Wikipedia pathwaysIRAK1BP1
Orthology - Evolution
OrthoDB134728
Phylogenetic Trees/Animal Genes : TreeFamIRAK1BP1
HOVERGENQ5VVH5
HOGENOMQ5VVH5
Homologs : HomoloGeneIRAK1BP1
Homology/Alignments : Family Browser (UCSC)IRAK1BP1
Gene fusions - Rearrangements
Fusion : QuiverIRAK1BP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIRAK1BP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IRAK1BP1
dbVarIRAK1BP1
ClinVarIRAK1BP1
1000_GenomesIRAK1BP1 
Exome Variant ServerIRAK1BP1
Varsome BrowserIRAK1BP1
Genetic variants : HAPMAP134728
Genomic Variants (DGV)IRAK1BP1 [DGVbeta]
DECIPHERIRAK1BP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIRAK1BP1 
Mutations
ICGC Data PortalIRAK1BP1 
TCGA Data PortalIRAK1BP1 
Broad Tumor PortalIRAK1BP1
OASIS PortalIRAK1BP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIRAK1BP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIRAK1BP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IRAK1BP1
DgiDB (Drug Gene Interaction Database)IRAK1BP1
DoCM (Curated mutations)IRAK1BP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IRAK1BP1 (select a term)
intoGenIRAK1BP1
Cancer3DIRAK1BP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615375   
Orphanet
DisGeNETIRAK1BP1
MedgenIRAK1BP1
Genetic Testing Registry IRAK1BP1
NextProtQ5VVH5 [Medical]
TSGene134728
GENETestsIRAK1BP1
Target ValidationIRAK1BP1
Huge Navigator IRAK1BP1 [HugePedia]
snp3D : Map Gene to Disease134728
BioCentury BCIQIRAK1BP1
ClinGenIRAK1BP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134728
Chemical/Pharm GKB GenePA134919096
Clinical trialIRAK1BP1
Miscellaneous
canSAR (ICR)IRAK1BP1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIRAK1BP1
EVEXIRAK1BP1
GoPubMedIRAK1BP1
iHOPIRAK1BP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:50:09 CEST 2018

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