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IRF2BP1 (interferon regulatory factor 2 binding protein 1)

Identity

Alias_symbol (synonym)DKFZP434M154
IRF-2BP1
Other alias-
HGNC (Hugo) IRF2BP1
LocusID (NCBI) 26145
Atlas_Id 64662
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45883607 and ends at 45886170 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IRF2BP1   21728
Cards
Entrez_Gene (NCBI)IRF2BP1  26145  interferon regulatory factor 2 binding protein 1
Aliases
GeneCards (Weizmann)IRF2BP1
Ensembl hg19 (Hinxton)ENSG00000170604 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170604 [Gene_View]  chr19:45883607-45886170 [Contig_View]  IRF2BP1 [Vega]
ICGC DataPortalENSG00000170604
TCGA cBioPortalIRF2BP1
AceView (NCBI)IRF2BP1
Genatlas (Paris)IRF2BP1
WikiGenes26145
SOURCE (Princeton)IRF2BP1
Genetics Home Reference (NIH)IRF2BP1
Genomic and cartography
GoldenPath hg38 (UCSC)IRF2BP1  -     chr19:45883607-45886170 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IRF2BP1  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblIRF2BP1 - 19q13.32 [CytoView hg19]  IRF2BP1 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIIRF2BP1 [Mapview hg19]  IRF2BP1 [Mapview hg38]
OMIM615331   
Gene and transcription
Genbank (Entrez)AK092407 AK223622 AK315060 AL080159 AY278022
RefSeq transcript (Entrez)NM_015649
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IRF2BP1
Cluster EST : UnigeneHs.515477 [ NCBI ]
CGAP (NCI)Hs.515477
Alternative Splicing GalleryENSG00000170604
Gene ExpressionIRF2BP1 [ NCBI-GEO ]   IRF2BP1 [ EBI - ARRAY_EXPRESS ]   IRF2BP1 [ SEEK ]   IRF2BP1 [ MEM ]
Gene Expression Viewer (FireBrowse)IRF2BP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26145
GTEX Portal (Tissue expression)IRF2BP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IU81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IU81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IU81
Splice isoforms : SwissVarQ8IU81
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8IU81
Domains : Interpro (EBI)Interferon_reg_fac2-bd1_2_Znf    Znf_C3HC4_RING-type   
Domain families : Pfam (Sanger)IRF-2BP1_2 (PF11261)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam11261    pfam00097   
Conserved Domain (NCBI)IRF2BP1
DMDM Disease mutations26145
Blocks (Seattle)IRF2BP1
SuperfamilyQ8IU81
Human Protein AtlasENSG00000170604
Peptide AtlasQ8IU81
HPRD17159
IPIIPI00645608   
Protein Interaction databases
DIP (DOE-UCLA)Q8IU81
IntAct (EBI)Q8IU81
FunCoupENSG00000170604
BioGRIDIRF2BP1
STRING (EMBL)IRF2BP1
ZODIACIRF2BP1
Ontologies - Pathways
QuickGOQ8IU81
Ontology : AmiGOprotein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  transferase activity  metal ion binding  
Ontology : EGO-EBIprotein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  transferase activity  metal ion binding  
NDEx NetworkIRF2BP1
Atlas of Cancer Signalling NetworkIRF2BP1
Wikipedia pathwaysIRF2BP1
Orthology - Evolution
OrthoDB26145
GeneTree (enSembl)ENSG00000170604
Phylogenetic Trees/Animal Genes : TreeFamIRF2BP1
HOVERGENQ8IU81
HOGENOMQ8IU81
Homologs : HomoloGeneIRF2BP1
Homology/Alignments : Family Browser (UCSC)IRF2BP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIRF2BP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IRF2BP1
dbVarIRF2BP1
ClinVarIRF2BP1
1000_GenomesIRF2BP1 
Exome Variant ServerIRF2BP1
ExAC (Exome Aggregation Consortium)IRF2BP1 (select the gene name)
Genetic variants : HAPMAP26145
Genomic Variants (DGV)IRF2BP1 [DGVbeta]
DECIPHERIRF2BP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIRF2BP1 
Mutations
ICGC Data PortalIRF2BP1 
TCGA Data PortalIRF2BP1 
Broad Tumor PortalIRF2BP1
OASIS PortalIRF2BP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIRF2BP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIRF2BP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IRF2BP1
DgiDB (Drug Gene Interaction Database)IRF2BP1
DoCM (Curated mutations)IRF2BP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IRF2BP1 (select a term)
intoGenIRF2BP1
Cancer3DIRF2BP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615331   
Orphanet
MedgenIRF2BP1
Genetic Testing Registry IRF2BP1
NextProtQ8IU81 [Medical]
TSGene26145
GENETestsIRF2BP1
Target ValidationIRF2BP1
Huge Navigator IRF2BP1 [HugePedia]
snp3D : Map Gene to Disease26145
BioCentury BCIQIRF2BP1
ClinGenIRF2BP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26145
Chemical/Pharm GKB GenePA134987893
Clinical trialIRF2BP1
Miscellaneous
canSAR (ICR)IRF2BP1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIRF2BP1
EVEXIRF2BP1
GoPubMedIRF2BP1
iHOPIRF2BP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:20 CEST 2017

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