Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IRGQ (immunity related GTPase Q)

Identity

Alias_namesIRGQ1
immunity-related GTPase family, Q1
Alias_symbol (synonym)FKSG27
Other alias
HGNC (Hugo) IRGQ
LocusID (NCBI) 126298
Atlas_Id 64665
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43584367 and ends at 43596135 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IRGQ (19q13.31) / RTF1 (15q15.1)IRGQ (19q13.31) / SWI5 (9q34.11)METTL2A (17q23.2) / IRGQ (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IRGQ   24868
Cards
Entrez_Gene (NCBI)IRGQ  126298  immunity related GTPase Q
AliasesFKSG27; IRGQ1
GeneCards (Weizmann)IRGQ
Ensembl hg19 (Hinxton)ENSG00000167378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167378 [Gene_View]  chr19:43584367-43596135 [Contig_View]  IRGQ [Vega]
ICGC DataPortalENSG00000167378
TCGA cBioPortalIRGQ
AceView (NCBI)IRGQ
Genatlas (Paris)IRGQ
WikiGenes126298
SOURCE (Princeton)IRGQ
Genetics Home Reference (NIH)IRGQ
Genomic and cartography
GoldenPath hg38 (UCSC)IRGQ  -     chr19:43584367-43596135 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IRGQ  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblIRGQ - 19q13.31 [CytoView hg19]  IRGQ - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIIRGQ [Mapview hg19]  IRGQ [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF322648 AK022583 AK096168 AK124786 AK128554
RefSeq transcript (Entrez)NM_001007561
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IRGQ
Cluster EST : UnigeneHs.6217 [ NCBI ]
CGAP (NCI)Hs.6217
Alternative Splicing GalleryENSG00000167378
Gene ExpressionIRGQ [ NCBI-GEO ]   IRGQ [ EBI - ARRAY_EXPRESS ]   IRGQ [ SEEK ]   IRGQ [ MEM ]
Gene Expression Viewer (FireBrowse)IRGQ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126298
GTEX Portal (Tissue expression)IRGQ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WZA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WZA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WZA9
Splice isoforms : SwissVarQ8WZA9
PhosPhoSitePlusQ8WZA9
Domaine pattern : Prosite (Expaxy)G_IRG (PS51716)   
Domains : Interpro (EBI)G_IRG_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)IRGQ
DMDM Disease mutations126298
Blocks (Seattle)IRGQ
SuperfamilyQ8WZA9
Human Protein AtlasENSG00000167378
Peptide AtlasQ8WZA9
HPRD17161
IPIIPI00103925   IPI00443479   
Protein Interaction databases
DIP (DOE-UCLA)Q8WZA9
IntAct (EBI)Q8WZA9
FunCoupENSG00000167378
BioGRIDIRGQ
STRING (EMBL)IRGQ
ZODIACIRGQ
Ontologies - Pathways
QuickGOQ8WZA9
Ontology : AmiGOGTP binding  
Ontology : EGO-EBIGTP binding  
NDEx NetworkIRGQ
Atlas of Cancer Signalling NetworkIRGQ
Wikipedia pathwaysIRGQ
Orthology - Evolution
OrthoDB126298
GeneTree (enSembl)ENSG00000167378
Phylogenetic Trees/Animal Genes : TreeFamIRGQ
HOVERGENQ8WZA9
HOGENOMQ8WZA9
Homologs : HomoloGeneIRGQ
Homology/Alignments : Family Browser (UCSC)IRGQ
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIRGQ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IRGQ
dbVarIRGQ
ClinVarIRGQ
1000_GenomesIRGQ 
Exome Variant ServerIRGQ
ExAC (Exome Aggregation Consortium)IRGQ (select the gene name)
Genetic variants : HAPMAP126298
Genomic Variants (DGV)IRGQ [DGVbeta]
DECIPHERIRGQ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIRGQ 
Mutations
ICGC Data PortalIRGQ 
TCGA Data PortalIRGQ 
Broad Tumor PortalIRGQ
OASIS PortalIRGQ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIRGQ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIRGQ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IRGQ
DgiDB (Drug Gene Interaction Database)IRGQ
DoCM (Curated mutations)IRGQ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IRGQ (select a term)
intoGenIRGQ
Cancer3DIRGQ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIRGQ
Genetic Testing Registry IRGQ
NextProtQ8WZA9 [Medical]
TSGene126298
GENETestsIRGQ
Target ValidationIRGQ
Huge Navigator IRGQ [HugePedia]
snp3D : Map Gene to Disease126298
BioCentury BCIQIRGQ
ClinGenIRGQ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126298
Chemical/Pharm GKB GenePA142671653
Clinical trialIRGQ
Miscellaneous
canSAR (ICR)IRGQ (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIRGQ
EVEXIRGQ
GoPubMedIRGQ
iHOPIRGQ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:41 CEST 2017

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