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ISG20L2 (interferon stimulated exonuclease gene 20kDa-like 2)

Identity

Alias_namesinterferon stimulated exonuclease gene 20kDa-like 2
Alias_symbol (synonym)FLJ12671
Other aliasHSD38
HGNC (Hugo) ISG20L2
LocusID (NCBI) 81875
Atlas_Id 64669
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 156691683 and ends at 156698231 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ISG20L2 (1q23.1) / ISG20L2 (1q23.1)ZNF550 (19q13.43) / ISG20L2 (1q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ISG20L2   25745
Cards
Entrez_Gene (NCBI)ISG20L2  81875  interferon stimulated exonuclease gene 20kDa-like 2
AliasesHSD38
GeneCards (Weizmann)ISG20L2
Ensembl hg19 (Hinxton)ENSG00000143319 [Gene_View]  chr1:156691683-156698231 [Contig_View]  ISG20L2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143319 [Gene_View]  chr1:156691683-156698231 [Contig_View]  ISG20L2 [Vega]
ICGC DataPortalENSG00000143319
TCGA cBioPortalISG20L2
AceView (NCBI)ISG20L2
Genatlas (Paris)ISG20L2
WikiGenes81875
SOURCE (Princeton)ISG20L2
Genetics Home Reference (NIH)ISG20L2
Genomic and cartography
GoldenPath hg19 (UCSC)ISG20L2  -     chr1:156691683-156698231 -  1q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ISG20L2  -     1q23.1   [Description]    (hg38-Dec_2013)
EnsemblISG20L2 - 1q23.1 [CytoView hg19]  ISG20L2 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIISG20L2 [Mapview hg19]  ISG20L2 [Mapview hg38]
OMIM611930   
Gene and transcription
Genbank (Entrez)AK021901 AK022733 AK095697 AK311586 AL096734
RefSeq transcript (Entrez)NM_001303095 NM_030980
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)ISG20L2
Cluster EST : UnigeneHs.301904 [ NCBI ]
CGAP (NCI)Hs.301904
Alternative Splicing GalleryENSG00000143319
Gene ExpressionISG20L2 [ NCBI-GEO ]   ISG20L2 [ EBI - ARRAY_EXPRESS ]   ISG20L2 [ SEEK ]   ISG20L2 [ MEM ]
Gene Expression Viewer (FireBrowse)ISG20L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81875
GTEX Portal (Tissue expression)ISG20L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9L3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9L3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9L3
Splice isoforms : SwissVarQ9H9L3
PhosPhoSitePlusQ9H9L3
Domains : Interpro (EBI)Exonuclease    Exonuclease_RNaseT/DNA_pol3    RNaseH-like_dom   
Domain families : Pfam (Sanger)RNase_T (PF00929)   
Domain families : Pfam (NCBI)pfam00929   
Domain families : Smart (EMBL)EXOIII (SM00479)  
Conserved Domain (NCBI)ISG20L2
DMDM Disease mutations81875
Blocks (Seattle)ISG20L2
SuperfamilyQ9H9L3
Human Protein AtlasENSG00000143319
Peptide AtlasQ9H9L3
HPRD07788
IPIIPI00008963   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9L3
IntAct (EBI)Q9H9L3
FunCoupENSG00000143319
BioGRIDISG20L2
STRING (EMBL)ISG20L2
ZODIACISG20L2
Ontologies - Pathways
QuickGOQ9H9L3
Ontology : AmiGOexonuclease activity  protein binding  nucleoplasm  nucleolus  ribosome biogenesis  poly(A) RNA binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIexonuclease activity  protein binding  nucleoplasm  nucleolus  ribosome biogenesis  poly(A) RNA binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkISG20L2
Atlas of Cancer Signalling NetworkISG20L2
Wikipedia pathwaysISG20L2
Orthology - Evolution
OrthoDB81875
GeneTree (enSembl)ENSG00000143319
Phylogenetic Trees/Animal Genes : TreeFamISG20L2
HOVERGENQ9H9L3
HOGENOMQ9H9L3
Homologs : HomoloGeneISG20L2
Homology/Alignments : Family Browser (UCSC)ISG20L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerISG20L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ISG20L2
dbVarISG20L2
ClinVarISG20L2
1000_GenomesISG20L2 
Exome Variant ServerISG20L2
ExAC (Exome Aggregation Consortium)ISG20L2 (select the gene name)
Genetic variants : HAPMAP81875
Genomic Variants (DGV)ISG20L2 [DGVbeta]
DECIPHER (Syndromes)1:156691683-156698231  ENSG00000143319
CONAN: Copy Number AnalysisISG20L2 
Mutations
ICGC Data PortalISG20L2 
TCGA Data PortalISG20L2 
Broad Tumor PortalISG20L2
OASIS PortalISG20L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICISG20L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDISG20L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ISG20L2
DgiDB (Drug Gene Interaction Database)ISG20L2
DoCM (Curated mutations)ISG20L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ISG20L2 (select a term)
intoGenISG20L2
Cancer3DISG20L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611930   
Orphanet
MedgenISG20L2
Genetic Testing Registry ISG20L2
NextProtQ9H9L3 [Medical]
TSGene81875
GENETestsISG20L2
Huge Navigator ISG20L2 [HugePedia]
snp3D : Map Gene to Disease81875
BioCentury BCIQISG20L2
ClinGenISG20L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81875
Chemical/Pharm GKB GenePA142671650
Clinical trialISG20L2
Miscellaneous
canSAR (ICR)ISG20L2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineISG20L2
EVEXISG20L2
GoPubMedISG20L2
iHOPISG20L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:02 CET 2017

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