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ISM1 (isthmin 1)

Identity

Alias_namesC20orf82
chromosome 20 open reading frame 82
isthmin 1 homolog (zebrafish)
isthmin 1, angiogenesis inhibitor
Alias_symbol (synonym)bA149I18.1
Other aliasISM
Isthmin
dJ1077I2.1
HGNC (Hugo) ISM1
LocusID (NCBI) 140862
Atlas_Id 64673
Location 20p12.1  [Link to chromosome band 20p12]
Location_base_pair Starts at 13221771 and ends at 13300650 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHD4 (12p13.31) / ISM1 (20p12.1)ISM1 (20p12.1) / IPO7 (11p15.4)ISM1 (20p12.1) / UGGT1 (2q14.3)
RNF24 (20p13) / ISM1 (20p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ISM1   16213
Cards
Entrez_Gene (NCBI)ISM1  140862  isthmin 1
AliasesC20orf82; ISM; Isthmin; bA149I18.1; 
dJ1077I2.1
GeneCards (Weizmann)ISM1
Ensembl hg19 (Hinxton)ENSG00000101230 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101230 [Gene_View]  chr20:13221771-13300650 [Contig_View]  ISM1 [Vega]
ICGC DataPortalENSG00000101230
TCGA cBioPortalISM1
AceView (NCBI)ISM1
Genatlas (Paris)ISM1
WikiGenes140862
SOURCE (Princeton)ISM1
Genetics Home Reference (NIH)ISM1
Genomic and cartography
GoldenPath hg38 (UCSC)ISM1  -     chr20:13221771-13300650 +  20p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ISM1  -     20p12.1   [Description]    (hg19-Feb_2009)
EnsemblISM1 - 20p12.1 [CytoView hg19]  ISM1 - 20p12.1 [CytoView hg38]
Mapping of homologs : NCBIISM1 [Mapview hg19]  ISM1 [Mapview hg38]
OMIM615793   
Gene and transcription
Genbank (Entrez)AK307409 BC017997 BQ771595 CR982468 DB169194
RefSeq transcript (Entrez)NM_080826
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ISM1
Cluster EST : UnigeneHs.559353 [ NCBI ]
CGAP (NCI)Hs.559353
Alternative Splicing GalleryENSG00000101230
Gene ExpressionISM1 [ NCBI-GEO ]   ISM1 [ EBI - ARRAY_EXPRESS ]   ISM1 [ SEEK ]   ISM1 [ MEM ]
Gene Expression Viewer (FireBrowse)ISM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140862
GTEX Portal (Tissue expression)ISM1
Human Protein AtlasENSG00000101230-ISM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB1AKI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB1AKI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB1AKI9
Splice isoforms : SwissVarB1AKI9
PhosPhoSitePlusB1AKI9
Domaine pattern : Prosite (Expaxy)AMOP (PS50856)    TSP1 (PS50092)   
Domains : Interpro (EBI)AMOP_dom    TSP1_rpt   
Domain families : Pfam (Sanger)AMOP (PF03782)    TSP_1 (PF00090)   
Domain families : Pfam (NCBI)pfam03782    pfam00090   
Domain families : Smart (EMBL)AMOP (SM00723)  TSP1 (SM00209)  
Conserved Domain (NCBI)ISM1
DMDM Disease mutations140862
Blocks (Seattle)ISM1
SuperfamilyB1AKI9
Human Protein Atlas [tissue]ENSG00000101230-ISM1 [tissue]
Peptide AtlasB1AKI9
IPIIPI00796798   
Protein Interaction databases
DIP (DOE-UCLA)B1AKI9
IntAct (EBI)B1AKI9
FunCoupENSG00000101230
BioGRIDISM1
STRING (EMBL)ISM1
ZODIACISM1
Ontologies - Pathways
QuickGOB1AKI9
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkISM1
Atlas of Cancer Signalling NetworkISM1
Wikipedia pathwaysISM1
Orthology - Evolution
OrthoDB140862
GeneTree (enSembl)ENSG00000101230
Phylogenetic Trees/Animal Genes : TreeFamISM1
HOVERGENB1AKI9
HOGENOMB1AKI9
Homologs : HomoloGeneISM1
Homology/Alignments : Family Browser (UCSC)ISM1
Gene fusions - Rearrangements
Tumor Fusion PortalISM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerISM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ISM1
dbVarISM1
ClinVarISM1
1000_GenomesISM1 
Exome Variant ServerISM1
ExAC (Exome Aggregation Consortium)ENSG00000101230
GNOMAD BrowserENSG00000101230
Genetic variants : HAPMAP140862
Genomic Variants (DGV)ISM1 [DGVbeta]
DECIPHERISM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisISM1 
Mutations
ICGC Data PortalISM1 
TCGA Data PortalISM1 
Broad Tumor PortalISM1
OASIS PortalISM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICISM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDISM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ISM1
DgiDB (Drug Gene Interaction Database)ISM1
DoCM (Curated mutations)ISM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ISM1 (select a term)
intoGenISM1
Cancer3DISM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615793   
Orphanet
DisGeNETISM1
MedgenISM1
Genetic Testing Registry ISM1
NextProtB1AKI9 [Medical]
TSGene140862
GENETestsISM1
Target ValidationISM1
Huge Navigator ISM1 [HugePedia]
snp3D : Map Gene to Disease140862
BioCentury BCIQISM1
ClinGenISM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140862
Chemical/Pharm GKB GenePA164721080
Clinical trialISM1
Miscellaneous
canSAR (ICR)ISM1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineISM1
EVEXISM1
GoPubMedISM1
iHOPISM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:34 CET 2017

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