Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ISOC1 (isochorismatase domain containing 1)

Identity

Alias_symbol (synonym)CGI-111
Other alias
HGNC (Hugo) ISOC1
LocusID (NCBI) 51015
Atlas_Id 64676
Location 5q23.3  [Link to chromosome band 5q23]
Location_base_pair Starts at 128430442 and ends at 128449719 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ISOC1   24254
Cards
Entrez_Gene (NCBI)ISOC1  51015  isochorismatase domain containing 1
AliasesCGI-111
GeneCards (Weizmann)ISOC1
Ensembl hg19 (Hinxton)ENSG00000066583 [Gene_View]  chr5:128430442-128449719 [Contig_View]  ISOC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000066583 [Gene_View]  chr5:128430442-128449719 [Contig_View]  ISOC1 [Vega]
ICGC DataPortalENSG00000066583
TCGA cBioPortalISOC1
AceView (NCBI)ISOC1
Genatlas (Paris)ISOC1
WikiGenes51015
SOURCE (Princeton)ISOC1
Genetics Home Reference (NIH)ISOC1
Genomic and cartography
GoldenPath hg19 (UCSC)ISOC1  -     chr5:128430442-128449719 +  5q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ISOC1  -     5q23.3   [Description]    (hg38-Dec_2013)
EnsemblISOC1 - 5q23.3 [CytoView hg19]  ISOC1 - 5q23.3 [CytoView hg38]
Mapping of homologs : NCBIISOC1 [Mapview hg19]  ISOC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151869 AK025787 BC008367 BC014105 BG715081
RefSeq transcript (Entrez)NM_016048
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)ISOC1
Cluster EST : UnigeneHs.483296 [ NCBI ]
CGAP (NCI)Hs.483296
Alternative Splicing GalleryENSG00000066583
Gene ExpressionISOC1 [ NCBI-GEO ]   ISOC1 [ EBI - ARRAY_EXPRESS ]   ISOC1 [ SEEK ]   ISOC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ISOC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51015
GTEX Portal (Tissue expression)ISOC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CN7
Splice isoforms : SwissVarQ96CN7
PhosPhoSitePlusQ96CN7
Domains : Interpro (EBI)Isochorismatase-like   
Domain families : Pfam (Sanger)Isochorismatase (PF00857)   
Domain families : Pfam (NCBI)pfam00857   
Conserved Domain (NCBI)ISOC1
DMDM Disease mutations51015
Blocks (Seattle)ISOC1
SuperfamilyQ96CN7
Human Protein AtlasENSG00000066583
Peptide AtlasQ96CN7
IPIIPI00304082   IPI00884070   IPI00966776   IPI00966364   IPI00966101   
Protein Interaction databases
DIP (DOE-UCLA)Q96CN7
IntAct (EBI)Q96CN7
FunCoupENSG00000066583
BioGRIDISOC1
STRING (EMBL)ISOC1
ZODIACISOC1
Ontologies - Pathways
QuickGOQ96CN7
Ontology : AmiGOmolecular_function  catalytic activity  protein binding  peroxisome  biological_process  metabolic process  extracellular exosome  
Ontology : EGO-EBImolecular_function  catalytic activity  protein binding  peroxisome  biological_process  metabolic process  extracellular exosome  
NDEx NetworkISOC1
Atlas of Cancer Signalling NetworkISOC1
Wikipedia pathwaysISOC1
Orthology - Evolution
OrthoDB51015
GeneTree (enSembl)ENSG00000066583
Phylogenetic Trees/Animal Genes : TreeFamISOC1
HOVERGENQ96CN7
HOGENOMQ96CN7
Homologs : HomoloGeneISOC1
Homology/Alignments : Family Browser (UCSC)ISOC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerISOC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ISOC1
dbVarISOC1
ClinVarISOC1
1000_GenomesISOC1 
Exome Variant ServerISOC1
ExAC (Exome Aggregation Consortium)ISOC1 (select the gene name)
Genetic variants : HAPMAP51015
Genomic Variants (DGV)ISOC1 [DGVbeta]
DECIPHER (Syndromes)5:128430442-128449719  ENSG00000066583
CONAN: Copy Number AnalysisISOC1 
Mutations
ICGC Data PortalISOC1 
TCGA Data PortalISOC1 
Broad Tumor PortalISOC1
OASIS PortalISOC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICISOC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDISOC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ISOC1
DgiDB (Drug Gene Interaction Database)ISOC1
DoCM (Curated mutations)ISOC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ISOC1 (select a term)
intoGenISOC1
Cancer3DISOC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenISOC1
Genetic Testing Registry ISOC1
NextProtQ96CN7 [Medical]
TSGene51015
GENETestsISOC1
Huge Navigator ISOC1 [HugePedia]
snp3D : Map Gene to Disease51015
BioCentury BCIQISOC1
ClinGenISOC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51015
Chemical/Pharm GKB GenePA134973470
Clinical trialISOC1
Miscellaneous
canSAR (ICR)ISOC1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineISOC1
EVEXISOC1
GoPubMedISOC1
iHOPISOC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:04 CET 2017

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