Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ISOC2 (isochorismatase domain containing 2)

Identity

Alias_symbol (synonym)FLJ23469
Other alias-
HGNC (Hugo) ISOC2
LocusID (NCBI) 79763
Atlas_Id 49763
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55964346 and ends at 55973049 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ISOC2   26278
Cards
Entrez_Gene (NCBI)ISOC2  79763  isochorismatase domain containing 2
Aliases
GeneCards (Weizmann)ISOC2
Ensembl hg19 (Hinxton)ENSG00000063241 [Gene_View]  chr19:55964346-55973049 [Contig_View]  ISOC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000063241 [Gene_View]  chr19:55964346-55973049 [Contig_View]  ISOC2 [Vega]
ICGC DataPortalENSG00000063241
TCGA cBioPortalISOC2
AceView (NCBI)ISOC2
Genatlas (Paris)ISOC2
WikiGenes79763
SOURCE (Princeton)ISOC2
Genetics Home Reference (NIH)ISOC2
Genomic and cartography
GoldenPath hg19 (UCSC)ISOC2  -     chr19:55964346-55973049 -  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ISOC2  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblISOC2 - 19q13.42 [CytoView hg19]  ISOC2 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIISOC2 [Mapview hg19]  ISOC2 [Mapview hg38]
OMIM612928   
Gene and transcription
Genbank (Entrez)AK027122 AK097280 AK131324 AK311540 BC017344
RefSeq transcript (Entrez)NM_001136201 NM_001136202 NM_024710
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ISOC2
Cluster EST : UnigeneHs.467306 [ NCBI ]
CGAP (NCI)Hs.467306
Alternative Splicing GalleryENSG00000063241
Gene ExpressionISOC2 [ NCBI-GEO ]   ISOC2 [ EBI - ARRAY_EXPRESS ]   ISOC2 [ SEEK ]   ISOC2 [ MEM ]
Gene Expression Viewer (FireBrowse)ISOC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79763
GTEX Portal (Tissue expression)ISOC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AB3
Splice isoforms : SwissVarQ96AB3
PhosPhoSitePlusQ96AB3
Domains : Interpro (EBI)Isochorismatase-like   
Domain families : Pfam (Sanger)Isochorismatase (PF00857)   
Domain families : Pfam (NCBI)pfam00857   
Conserved Domain (NCBI)ISOC2
DMDM Disease mutations79763
Blocks (Seattle)ISOC2
SuperfamilyQ96AB3
Human Protein AtlasENSG00000063241
Peptide AtlasQ96AB3
HPRD08030
IPIIPI00551022   IPI00003031   IPI00442223   
Protein Interaction databases
DIP (DOE-UCLA)Q96AB3
IntAct (EBI)Q96AB3
FunCoupENSG00000063241
BioGRIDISOC2
STRING (EMBL)ISOC2
ZODIACISOC2
Ontologies - Pathways
QuickGOQ96AB3
Ontology : AmiGOcatalytic activity  protein binding  nucleus  cytoplasm  metabolic process  protein destabilization  
Ontology : EGO-EBIcatalytic activity  protein binding  nucleus  cytoplasm  metabolic process  protein destabilization  
NDEx NetworkISOC2
Atlas of Cancer Signalling NetworkISOC2
Wikipedia pathwaysISOC2
Orthology - Evolution
OrthoDB79763
GeneTree (enSembl)ENSG00000063241
Phylogenetic Trees/Animal Genes : TreeFamISOC2
HOVERGENQ96AB3
HOGENOMQ96AB3
Homologs : HomoloGeneISOC2
Homology/Alignments : Family Browser (UCSC)ISOC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerISOC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ISOC2
dbVarISOC2
ClinVarISOC2
1000_GenomesISOC2 
Exome Variant ServerISOC2
ExAC (Exome Aggregation Consortium)ISOC2 (select the gene name)
Genetic variants : HAPMAP79763
Genomic Variants (DGV)ISOC2 [DGVbeta]
DECIPHER (Syndromes)19:55964346-55973049  ENSG00000063241
CONAN: Copy Number AnalysisISOC2 
Mutations
ICGC Data PortalISOC2 
TCGA Data PortalISOC2 
Broad Tumor PortalISOC2
OASIS PortalISOC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICISOC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDISOC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ISOC2
DgiDB (Drug Gene Interaction Database)ISOC2
DoCM (Curated mutations)ISOC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ISOC2 (select a term)
intoGenISOC2
Cancer3DISOC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612928   
Orphanet
MedgenISOC2
Genetic Testing Registry ISOC2
NextProtQ96AB3 [Medical]
TSGene79763
GENETestsISOC2
Huge Navigator ISOC2 [HugePedia]
snp3D : Map Gene to Disease79763
BioCentury BCIQISOC2
ClinGenISOC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79763
Chemical/Pharm GKB GenePA134981722
Clinical trialISOC2
Miscellaneous
canSAR (ICR)ISOC2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineISOC2
EVEXISOC2
GoPubMedISOC2
iHOPISOC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:05:31 CEST 2017

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