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ITFG1 (integrin alpha FG-GAP repeat containing 1)

Identity

Alias_symbol (synonym)CDA08
TIP
LNKN-1
Other alias2310047C21Rik
HGNC (Hugo) ITFG1
LocusID (NCBI) 81533
Atlas_Id 64681
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 47154388 and ends at 47461274 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C17orf67 (17q22) / ITFG1 (16q12.1)ITFG1 (16q12.1) / PHKB (16q12.1)ITFG1 (16q12.1) / TRIM60 (4q32.3)
ITFG1 (16q12.1) / ZNF423 (16q12.1)TOX3 (16q12.1) / ITFG1 (16q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ITFG1   30697
Cards
Entrez_Gene (NCBI)ITFG1  81533  integrin alpha FG-GAP repeat containing 1
Aliases2310047C21Rik; CDA08; LNKN-1; TIP
GeneCards (Weizmann)ITFG1
Ensembl hg19 (Hinxton)ENSG00000129636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129636 [Gene_View]  chr16:47154388-47461274 [Contig_View]  ITFG1 [Vega]
ICGC DataPortalENSG00000129636
TCGA cBioPortalITFG1
AceView (NCBI)ITFG1
Genatlas (Paris)ITFG1
WikiGenes81533
SOURCE (Princeton)ITFG1
Genetics Home Reference (NIH)ITFG1
Genomic and cartography
GoldenPath hg38 (UCSC)ITFG1  -     chr16:47154388-47461274 -  16q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ITFG1  -     16q12.1   [Description]    (hg19-Feb_2009)
EnsemblITFG1 - 16q12.1 [CytoView hg19]  ITFG1 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBIITFG1 [Mapview hg19]  ITFG1 [Mapview hg38]
OMIM611803   
Gene and transcription
Genbank (Entrez)AF212247 AF503339 AK027596 AK295228 AK299641
RefSeq transcript (Entrez)NM_001305002 NM_030790
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ITFG1
Cluster EST : UnigeneHs.592539 [ NCBI ]
CGAP (NCI)Hs.592539
Alternative Splicing GalleryENSG00000129636
Gene ExpressionITFG1 [ NCBI-GEO ]   ITFG1 [ EBI - ARRAY_EXPRESS ]   ITFG1 [ SEEK ]   ITFG1 [ MEM ]
Gene Expression Viewer (FireBrowse)ITFG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81533
GTEX Portal (Tissue expression)ITFG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB96
Splice isoforms : SwissVarQ8TB96
PhosPhoSitePlusQ8TB96
Domains : Interpro (EBI)Tip   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ITFG1
DMDM Disease mutations81533
Blocks (Seattle)ITFG1
SuperfamilyQ8TB96
Human Protein AtlasENSG00000129636
Peptide AtlasQ8TB96
HPRD16692
IPIIPI00006547   IPI01010882   IPI01009965   IPI01015581   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB96
IntAct (EBI)Q8TB96
FunCoupENSG00000129636
BioGRIDITFG1
STRING (EMBL)ITFG1
ZODIACITFG1
Ontologies - Pathways
QuickGOQ8TB96
Ontology : AmiGOintegral component of membrane  extracellular exosome  
Ontology : EGO-EBIintegral component of membrane  extracellular exosome  
NDEx NetworkITFG1
Atlas of Cancer Signalling NetworkITFG1
Wikipedia pathwaysITFG1
Orthology - Evolution
OrthoDB81533
GeneTree (enSembl)ENSG00000129636
Phylogenetic Trees/Animal Genes : TreeFamITFG1
HOVERGENQ8TB96
HOGENOMQ8TB96
Homologs : HomoloGeneITFG1
Homology/Alignments : Family Browser (UCSC)ITFG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerITFG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ITFG1
dbVarITFG1
ClinVarITFG1
1000_GenomesITFG1 
Exome Variant ServerITFG1
ExAC (Exome Aggregation Consortium)ITFG1 (select the gene name)
Genetic variants : HAPMAP81533
Genomic Variants (DGV)ITFG1 [DGVbeta]
DECIPHERITFG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisITFG1 
Mutations
ICGC Data PortalITFG1 
TCGA Data PortalITFG1 
Broad Tumor PortalITFG1
OASIS PortalITFG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICITFG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDITFG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ITFG1
DgiDB (Drug Gene Interaction Database)ITFG1
DoCM (Curated mutations)ITFG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ITFG1 (select a term)
intoGenITFG1
Cancer3DITFG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611803   
Orphanet
MedgenITFG1
Genetic Testing Registry ITFG1
NextProtQ8TB96 [Medical]
TSGene81533
GENETestsITFG1
Target ValidationITFG1
Huge Navigator ITFG1 [HugePedia]
snp3D : Map Gene to Disease81533
BioCentury BCIQITFG1
ClinGenITFG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81533
Chemical/Pharm GKB GenePA143485506
Clinical trialITFG1
Miscellaneous
canSAR (ICR)ITFG1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineITFG1
EVEXITFG1
GoPubMedITFG1
iHOPITFG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:44 CEST 2017

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