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ITFG2 (integrin alpha FG-GAP repeat containing 2)

Identity

Alias_symbol (synonym)MDS028
Other aliasFGGAP1
HGNC (Hugo) ITFG2
LocusID (NCBI) 55846
Atlas_Id 64683
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 2812621 and ends at 2825071 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RIMKLB (12p13.31) / ITFG2 (12p13.33)SMG6 (17p13.3) / ITFG2 (12p13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ITFG2   30879
Cards
Entrez_Gene (NCBI)ITFG2  55846  integrin alpha FG-GAP repeat containing 2
AliasesFGGAP1; MDS028
GeneCards (Weizmann)ITFG2
Ensembl hg19 (Hinxton)ENSG00000111203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111203 [Gene_View]  chr12:2812621-2825071 [Contig_View]  ITFG2 [Vega]
ICGC DataPortalENSG00000111203
TCGA cBioPortalITFG2
AceView (NCBI)ITFG2
Genatlas (Paris)ITFG2
WikiGenes55846
SOURCE (Princeton)ITFG2
Genetics Home Reference (NIH)ITFG2
Genomic and cartography
GoldenPath hg38 (UCSC)ITFG2  -     chr12:2812621-2825071 +  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ITFG2  -     12p13.33   [Description]    (hg19-Feb_2009)
EnsemblITFG2 - 12p13.33 [CytoView hg19]  ITFG2 - 12p13.33 [CytoView hg38]
Mapping of homologs : NCBIITFG2 [Mapview hg19]  ITFG2 [Mapview hg38]
OMIM617421   
Gene and transcription
Genbank (Entrez)AF220048 AK027483 AK130319 AK291110 AK297189
RefSeq transcript (Entrez)NM_018463
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ITFG2
Cluster EST : UnigeneHs.448720 [ NCBI ]
CGAP (NCI)Hs.448720
Alternative Splicing GalleryENSG00000111203
Gene ExpressionITFG2 [ NCBI-GEO ]   ITFG2 [ EBI - ARRAY_EXPRESS ]   ITFG2 [ SEEK ]   ITFG2 [ MEM ]
Gene Expression Viewer (FireBrowse)ITFG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55846
GTEX Portal (Tissue expression)ITFG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969R8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969R8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969R8
Splice isoforms : SwissVarQ969R8
PhosPhoSitePlusQ969R8
Domains : Interpro (EBI)Itfg2    WD40_repeat_dom   
Domain families : Pfam (Sanger)Itfg2 (PF15907)   
Domain families : Pfam (NCBI)pfam15907   
Conserved Domain (NCBI)ITFG2
DMDM Disease mutations55846
Blocks (Seattle)ITFG2
SuperfamilyQ969R8
Human Protein AtlasENSG00000111203
Peptide AtlasQ969R8
HPRD14379
IPIIPI00299911   IPI00796187   IPI01015078   IPI00160898   IPI01014232   IPI00449321   IPI01013749   IPI01014639   IPI01018936   
Protein Interaction databases
DIP (DOE-UCLA)Q969R8
IntAct (EBI)Q969R8
FunCoupENSG00000111203
BioGRIDITFG2
STRING (EMBL)ITFG2
ZODIACITFG2
Ontologies - Pathways
QuickGOQ969R8
Ontology : AmiGOgerminal center B cell differentiation  nucleoplasm  lysosomal membrane  cytosol  cellular response to amino acid starvation  cellular response to glucose starvation  KICSTOR complex  negative regulation of TORC1 signaling  
Ontology : EGO-EBIgerminal center B cell differentiation  nucleoplasm  lysosomal membrane  cytosol  cellular response to amino acid starvation  cellular response to glucose starvation  KICSTOR complex  negative regulation of TORC1 signaling  
NDEx NetworkITFG2
Atlas of Cancer Signalling NetworkITFG2
Wikipedia pathwaysITFG2
Orthology - Evolution
OrthoDB55846
GeneTree (enSembl)ENSG00000111203
Phylogenetic Trees/Animal Genes : TreeFamITFG2
HOVERGENQ969R8
HOGENOMQ969R8
Homologs : HomoloGeneITFG2
Homology/Alignments : Family Browser (UCSC)ITFG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerITFG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ITFG2
dbVarITFG2
ClinVarITFG2
1000_GenomesITFG2 
Exome Variant ServerITFG2
ExAC (Exome Aggregation Consortium)ITFG2 (select the gene name)
Genetic variants : HAPMAP55846
Genomic Variants (DGV)ITFG2 [DGVbeta]
DECIPHERITFG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisITFG2 
Mutations
ICGC Data PortalITFG2 
TCGA Data PortalITFG2 
Broad Tumor PortalITFG2
OASIS PortalITFG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICITFG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDITFG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ITFG2
DgiDB (Drug Gene Interaction Database)ITFG2
DoCM (Curated mutations)ITFG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ITFG2 (select a term)
intoGenITFG2
Cancer3DITFG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617421   
Orphanet
MedgenITFG2
Genetic Testing Registry ITFG2
NextProtQ969R8 [Medical]
TSGene55846
GENETestsITFG2
Target ValidationITFG2
Huge Navigator ITFG2 [HugePedia]
snp3D : Map Gene to Disease55846
BioCentury BCIQITFG2
ClinGenITFG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55846
Chemical/Pharm GKB GenePA143485507
Clinical trialITFG2
Miscellaneous
canSAR (ICR)ITFG2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineITFG2
EVEXITFG2
GoPubMedITFG2
iHOPITFG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:17:58 CEST 2017

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