Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ITFG3 (integrin alpha FG-GAP repeat containing 3)

Identity

Other aliasC16orf9
gs19
HGNC (Hugo) ITFG3
LocusID (NCBI) 83986
Atlas_Id 64684
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 284545 and ends at 316124 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ITFG3   14163
Cards
Entrez_Gene (NCBI)ITFG3  83986  integrin alpha FG-GAP repeat containing 3
AliasesC16orf9; gs19
GeneCards (Weizmann)ITFG3
Ensembl hg19 (Hinxton)ENSG00000167930 [Gene_View]  chr16:284545-316124 [Contig_View]  ITFG3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167930 [Gene_View]  chr16:284545-316124 [Contig_View]  ITFG3 [Vega]
ICGC DataPortalENSG00000167930
TCGA cBioPortalITFG3
AceView (NCBI)ITFG3
Genatlas (Paris)ITFG3
WikiGenes83986
SOURCE (Princeton)ITFG3
Genetics Home Reference (NIH)ITFG3
Genomic and cartography
GoldenPath hg19 (UCSC)ITFG3  -     chr16:284545-316124 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ITFG3  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblITFG3 - 16p13.3 [CytoView hg19]  ITFG3 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIITFG3 [Mapview hg19]  ITFG3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057165 AK294581 AK310766 AL136542 AM393647
RefSeq transcript (Entrez)NM_001284497 NM_032039
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)ITFG3
Cluster EST : UnigeneHs.513225 [ NCBI ]
CGAP (NCI)Hs.513225
Alternative Splicing GalleryENSG00000167930
Gene ExpressionITFG3 [ NCBI-GEO ]   ITFG3 [ EBI - ARRAY_EXPRESS ]   ITFG3 [ SEEK ]   ITFG3 [ MEM ]
Gene Expression Viewer (FireBrowse)ITFG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83986
GTEX Portal (Tissue expression)ITFG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0X4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0X4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0X4
Splice isoforms : SwissVarQ9H0X4
PhosPhoSitePlusQ9H0X4
Domains : Interpro (EBI)Quinonprotein_ADH-like_supfam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ITFG3
DMDM Disease mutations83986
Blocks (Seattle)ITFG3
SuperfamilyQ9H0X4
Human Protein AtlasENSG00000167930
Peptide AtlasQ9H0X4
HPRD12677
IPIIPI00845516   IPI00396658   IPI00658094   IPI00045487   IPI00657824   IPI00464981   IPI00658142   IPI00658207   IPI00658177   IPI00853019   IPI00852802   IPI00852869   IPI00852655   IPI00852729   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0X4
IntAct (EBI)Q9H0X4
FunCoupENSG00000167930
BioGRIDITFG3
STRING (EMBL)ITFG3
ZODIACITFG3
Ontologies - Pathways
QuickGOQ9H0X4
Ontology : AmiGOmolecular_function  biological_process  cell surface  integral component of membrane  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  cell surface  integral component of membrane  extracellular exosome  
NDEx NetworkITFG3
Atlas of Cancer Signalling NetworkITFG3
Wikipedia pathwaysITFG3
Orthology - Evolution
OrthoDB83986
GeneTree (enSembl)ENSG00000167930
Phylogenetic Trees/Animal Genes : TreeFamITFG3
HOVERGENQ9H0X4
HOGENOMQ9H0X4
Homologs : HomoloGeneITFG3
Homology/Alignments : Family Browser (UCSC)ITFG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerITFG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ITFG3
dbVarITFG3
ClinVarITFG3
1000_GenomesITFG3 
Exome Variant ServerITFG3
ExAC (Exome Aggregation Consortium)ITFG3 (select the gene name)
Genetic variants : HAPMAP83986
Genomic Variants (DGV)ITFG3 [DGVbeta]
DECIPHER (Syndromes)16:284545-316124  ENSG00000167930
CONAN: Copy Number AnalysisITFG3 
Mutations
ICGC Data PortalITFG3 
TCGA Data PortalITFG3 
Broad Tumor PortalITFG3
OASIS PortalITFG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICITFG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDITFG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ITFG3
DgiDB (Drug Gene Interaction Database)ITFG3
DoCM (Curated mutations)ITFG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ITFG3 (select a term)
intoGenITFG3
Cancer3DITFG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenITFG3
Genetic Testing Registry ITFG3
NextProtQ9H0X4 [Medical]
TSGene83986
GENETestsITFG3
Huge Navigator ITFG3 [HugePedia]
snp3D : Map Gene to Disease83986
BioCentury BCIQITFG3
ClinGenITFG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83986
Chemical/Pharm GKB GenePA25564
Clinical trialITFG3
Miscellaneous
canSAR (ICR)ITFG3 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineITFG3
EVEXITFG3
GoPubMedITFG3
iHOPITFG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:09:05 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.