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ITGA7 (integrin subunit alpha 7)

Identity

Alias_namesintegrin
Other alias-
HGNC (Hugo) ITGA7
LocusID (NCBI) 3679
Atlas_Id 41008
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 55684570 and ends at 55707902 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ITGA7 (12q13.2) / ITGA7 (12q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ITGA7   6143
LRG (Locus Reference Genomic)LRG_871
Cards
Entrez_Gene (NCBI)ITGA7  3679  integrin subunit alpha 7
Aliases
GeneCards (Weizmann)ITGA7
Ensembl hg19 (Hinxton)ENSG00000135424 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135424 [Gene_View]  chr12:55684570-55707902 [Contig_View]  ITGA7 [Vega]
ICGC DataPortalENSG00000135424
TCGA cBioPortalITGA7
AceView (NCBI)ITGA7
Genatlas (Paris)ITGA7
WikiGenes3679
SOURCE (Princeton)ITGA7
Genetics Home Reference (NIH)ITGA7
Genomic and cartography
GoldenPath hg38 (UCSC)ITGA7  -     chr12:55684570-55707902 -  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ITGA7  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblITGA7 - 12q13.2 [CytoView hg19]  ITGA7 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIITGA7 [Mapview hg19]  ITGA7 [Mapview hg38]
OMIM600536   613204   
Gene and transcription
Genbank (Entrez)AB210036 AF032108 AF034833 AF052050 AF072132
RefSeq transcript (Entrez)NM_001144996 NM_001144997 NM_002206
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ITGA7
Cluster EST : UnigeneHs.524484 [ NCBI ]
CGAP (NCI)Hs.524484
Alternative Splicing GalleryENSG00000135424
Gene ExpressionITGA7 [ NCBI-GEO ]   ITGA7 [ EBI - ARRAY_EXPRESS ]   ITGA7 [ SEEK ]   ITGA7 [ MEM ]
Gene Expression Viewer (FireBrowse)ITGA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3679
GTEX Portal (Tissue expression)ITGA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13683   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13683  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13683
Splice isoforms : SwissVarQ13683
PhosPhoSitePlusQ13683
Domaine pattern : Prosite (Expaxy)FG_GAP (PS51470)    INTEGRIN_ALPHA (PS00242)   
Domains : Interpro (EBI)FG-GAP    Int_alpha_beta-p    Integrin_alpha    Integrin_alpha-2    Integrin_alpha_C_CS    Integrin_dom   
Domain families : Pfam (Sanger)FG-GAP (PF01839)    Integrin_alpha2 (PF08441)   
Domain families : Pfam (NCBI)pfam01839    pfam08441   
Domain families : Smart (EMBL)Int_alpha (SM00191)  
Conserved Domain (NCBI)ITGA7
DMDM Disease mutations3679
Blocks (Seattle)ITGA7
SuperfamilyQ13683
Human Protein AtlasENSG00000135424
Peptide AtlasQ13683
HPRD02761
IPIIPI00014478   IPI00216421   IPI00216422   IPI00411446   IPI00973410   IPI00220748   IPI00220749   IPI00220750   IPI00220751   IPI00220752   IPI00220755   IPI00220756   IPI00220757   IPI01026519   IPI01025104   IPI01025391   IPI01025519   IPI01025617   IPI01025663   IPI01025772   
Protein Interaction databases
DIP (DOE-UCLA)Q13683
IntAct (EBI)Q13683
FunCoupENSG00000135424
BioGRIDITGA7
STRING (EMBL)ITGA7
ZODIACITGA7
Ontologies - Pathways
QuickGOQ13683
Ontology : AmiGOprotein binding  plasma membrane  cell-matrix adhesion  integrin-mediated signaling pathway  muscle organ development  integrin complex  regulation of cell shape  cell surface  extracellular matrix organization  heterotypic cell-cell adhesion  endodermal cell differentiation  metal ion binding  
Ontology : EGO-EBIprotein binding  plasma membrane  cell-matrix adhesion  integrin-mediated signaling pathway  muscle organ development  integrin complex  regulation of cell shape  cell surface  extracellular matrix organization  heterotypic cell-cell adhesion  endodermal cell differentiation  metal ion binding  
Pathways : KEGG   
NDEx NetworkITGA7
Atlas of Cancer Signalling NetworkITGA7
Wikipedia pathwaysITGA7
Orthology - Evolution
OrthoDB3679
GeneTree (enSembl)ENSG00000135424
Phylogenetic Trees/Animal Genes : TreeFamITGA7
HOVERGENQ13683
HOGENOMQ13683
Homologs : HomoloGeneITGA7
Homology/Alignments : Family Browser (UCSC)ITGA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerITGA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ITGA7
dbVarITGA7
ClinVarITGA7
1000_GenomesITGA7 
Exome Variant ServerITGA7
ExAC (Exome Aggregation Consortium)ITGA7 (select the gene name)
Genetic variants : HAPMAP3679
Genomic Variants (DGV)ITGA7 [DGVbeta]
DECIPHERITGA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisITGA7 
Mutations
ICGC Data PortalITGA7 
TCGA Data PortalITGA7 
Broad Tumor PortalITGA7
OASIS PortalITGA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICITGA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDITGA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ITGA7
DgiDB (Drug Gene Interaction Database)ITGA7
DoCM (Curated mutations)ITGA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ITGA7 (select a term)
intoGenITGA7
Cancer3DITGA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600536    613204   
Orphanet493    10342   
MedgenITGA7
Genetic Testing Registry ITGA7
NextProtQ13683 [Medical]
TSGene3679
GENETestsITGA7
Huge Navigator ITGA7 [HugePedia]
snp3D : Map Gene to Disease3679
BioCentury BCIQITGA7
ClinGenITGA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3679
Chemical/Pharm GKB GenePA29943
Clinical trialITGA7
Miscellaneous
canSAR (ICR)ITGA7 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineITGA7
EVEXITGA7
GoPubMedITGA7
iHOPITGA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:20:51 CEST 2017

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