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ITGA8 (integrin, alpha 8)

Identity

Other names-
HGNC (Hugo) ITGA8
LocusID (NCBI) 8516
Location 10p13
Location_base_pair Starts at 15559088 and ends at 15761770 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ITGA8   6144
Entrez_Gene (NCBI)ITGA8  8516  integrin, alpha 8
Cards
GeneCards (Weizmann)ITGA8
Ensembl (Hinxton) [Gene_View]  chr10:15559088-15761770 [Contig_View]  ITGA8 [Vega]
AceView (NCBI)ITGA8
Genatlas (Paris)ITGA8
SOURCE (Stanford)NM_003638
Genomic and cartography
GoldenPath (UCSC)ITGA8  -  10p13   chr10:15559088-15761770 -  10p13   [Description]    (hg19-Feb_2009)
EnsemblITGA8 - 10p13 [CytoView]
Mapping of homologs : NCBIITGA8 [Mapview]
OMIM604063   
Gene and transcription
Genbank (Entrez)AK297740 AK308240 BC148352 L36531
RefSeq transcript (SRS)NM_003638
RefSeq transcript (Entrez)NM_003638
RefSeq genomic (SRS)AC_000142 NC_000010 NC_018921 NT_008705 NW_001837931 NW_004929370
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_008705 NW_001837931 NW_004929370
Consensus coding sequences : CCDS (NCBI)ITGA8
Cluster EST : UnigeneHs.171311 [ SRS ] Hs.171311 [ NCBI ]
CGAP (NCI)Hs.171311
Alternative Splicing : Fast-db (Paris)GSHG0003900
Gene ExpressionITGA8 [ NCBI-GEO ]   ITGA8 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53708 (SRS) P53708 (Uniprot)
NextProtP53708  [Medical]
With graphics : InterProP53708
Splice isoforms : SwissVarP53708(Swissvar)
Domaine pattern : Prosite (SRS)FG_GAP (PS51470)    INTEGRIN_ALPHA (PS00242)   
Domaine pattern : Prosite (Expaxy)FG_GAP (PS51470)    INTEGRIN_ALPHA (PS00242)   
Domains : Interpro (SRS)FG-GAP    Int_alpha_beta-p    Integrin_alpha    Integrin_alpha-2    Integrin_alpha_C_CS   
Domains : Interpro (EBI)FG-GAP    Int_alpha_beta-p    Integrin_alpha    Integrin_alpha-2    Integrin_alpha_C_CS   
Related proteins : CluSTrP53708
Domain families : Pfam (SRS)FG-GAP (PF01839)    Integrin_alpha (PF00357)    Integrin_alpha2 (PF08441)   
Domain families : Pfam (Sanger)FG-GAP (PF01839)    Integrin_alpha (PF00357)    Integrin_alpha2 (PF08441)   
Domain families : Pfam (NCBI)pfam01839    pfam00357    pfam08441   
Domain families : Smart (EMBL)Int_alpha (SM00191)  
DMDM8516
Blocks (Seattle)P53708
HPRD10361
IPIIPI00023410   IPI01012103   
Protein Interaction databases
DIP (DOE-UCLA)P53708
IntAct (EBI)P53708
REACTOMEITGA8
Protein Interaction Database8516
BioGRIDITGA8
InParanoidP53708
Interologous Interaction database P53708
IntegromeDBITGA8
Gene fusion - rearrangments
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ITGA8
SNP (GeneSNP Utah)ITGA8
SNP : HGBaseITGA8
Genetic variants : HAPMAPITGA8
Somatic Mutations in Cancer : COSMICITGA8 
CONAN: Copy Number AnalysisITGA8 
Mutations and Diseases : HGMDITGA8
OMIM604063   
GENETests604063   
Disease Genetic AssociationITGA8
Huge Navigator ITGA8 [HugePedia]  ITGA8 [HugeCancerGEM]
Genomic VariantsITGA8  ITGA8 [DGVbeta]
ClinVarITGA8
snp3D : Map Gene to Disease8516
General knowledge
Homologs : HomoloGeneITGA8
Homology/Alignments : Family Browser (UCSC)ITGA8
Phylogenetic Trees/Animal Genes : TreeFamITGA8
Chemical/Protein Interactions : CTD8516
Chemical/Pharm GKB GenePA29944
Clinical trialITGA8
Ontology : AmiGOmetanephros development  plasma membrane  cell-matrix adhesion  integrin-mediated signaling pathway  nervous system development  memory  integrin complex  cell-cell adhesion  cell projection organization  extracellular matrix organization  positive regulation of transforming growth factor beta receptor signaling pathway  alpha8-beta1 integrin complex  inner ear morphogenesis  apical part of cell  establishment of protein localization  metal ion binding  smooth muscle tissue development  positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation  
Ontology : EGO-EBImetanephros development  plasma membrane  cell-matrix adhesion  integrin-mediated signaling pathway  nervous system development  memory  integrin complex  cell-cell adhesion  cell projection organization  extracellular matrix organization  positive regulation of transforming growth factor beta receptor signaling pathway  alpha8-beta1 integrin complex  inner ear morphogenesis  apical part of cell  establishment of protein localization  metal ion binding  smooth muscle tissue development  positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation  
Pathways : KEGGECM-receptor interactionCell adhesion molecules (CAMs)Focal adhesionRegulation of actin cytoskeleton
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneITGA8
iHOPITGA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Dec 3 19:50:22 CET 2013
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