ITGA9 (integrin, alpha 9)

Identity

Other names	ALPHA-RLC
	ITGA4L
	RLC
HGNC	ITGA9
Location	3p21.3
Location_base_pair	Starts at 37468817 and ends at 37836285 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	ITGA9   6145
Entrez_Gene	ITGA9  3680  integrin, alpha 9
	Cards
GeneCards	ITGA9
Ensembl	ITGA9 [Search_View]   ENSG00000144668 [Gene_View]
Genatlas	ITGA9
GeneLynx	ITGA9
eGenome	ITGA9
euGene	3680
	Genomic and cartography
GoldenPath	ITGA9  -  3p21.3   chr3:37468817-37836285 +  3p22.2   [Description]    (hg18-March_2006)
Ensembl	ITGA9 - 3p22.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	ITGA9
	Gene and transcription
Genbank	AK026826 [ ENTREZ ]
Genbank	AK123884 [ ENTREZ ]
Genbank	BC030198 [ ENTREZ ]
Genbank	BX647350 [ ENTREZ ]
Genbank	D25303 [ ENTREZ ]
RefSeq	NM_002207 [ SRS ]    NM_002207 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_022517 [ SRS ]    NT_022517 [ ENTREZ ]
RefSeq	NW_001838877 [ SRS ]    NW_001838877 [ ENTREZ ]
RefSeq	NW_921651 [ SRS ]    NW_921651 [ ENTREZ ]
AceView	ITGA9 AceView - NCBI
Unigene	Hs.113157 [ SRS ]    Hs.113157 [ NCBI ]     HS113157 [ spliceNest ]
Fast-db	3938 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q13797 [ SRS]    Q13797 [ EXPASY ]     Q13797 [ INTERPRO ]     Q13797 [ UNIPROT ]
Prosite	PS00242 INTEGRIN_ALPHA [ SRS ]    PS00242 INTEGRIN_ALPHA [ Expasy ]
Interpro	IPR013517 FG-GAP [ SRS ]    IPR013517 FG-GAP [ EBI ]
Interpro	IPR013519 Int_alpha_beta-p [ SRS ]    IPR013519 Int_alpha_beta-p [ EBI ]
Interpro	IPR000413 Integrin_alpha [ SRS ]    IPR000413 Integrin_alpha [ EBI ]
Interpro	IPR013649 Integrin_alpha-2 [ SRS ]    IPR013649 Integrin_alpha-2 [ EBI ]
Interpro	IPR013513 Integrin_alpha_C [ SRS ]    IPR013513 Integrin_alpha_C [ EBI ]
CluSTr	Q13797
Pfam	PF01839 FG-GAP [ SRS ]    PF01839 FG-GAP [ Sanger ]    pfam01839 [ NCBI-CDD ]
Pfam	PF00357 Integrin_alpha [ SRS ]    PF00357 Integrin_alpha [ Sanger ]    pfam00357 [ NCBI-CDD ]
Pfam	PF08441 Integrin_alpha2 [ SRS ]    PF08441 Integrin_alpha2 [ Sanger ]    pfam08441 [ NCBI-CDD ]
Smart	SM00191 Int_alpha [EMBL]
Blocks	Q13797
HPRD	04910
	Protein Interaction databases
DIP	Q13797
IntAct	Q13797
	Polymorphism : SNP, mutations, diseases
OMIM	603963    [ map ]
GENECLINICS	603963
SNP	ITGA9 [dbSNP-NCBI]
SNP	NM_002207 [SNP-NCI]
SNP	ITGA9 [GeneSNPs - Utah]  ITGA9] [HGBASE - SRS]
HAPMAP	ITGA9 [HAPMAP]
COSMIC	ITGA9 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	ITGA9
	General knowledge
Family Browser	ITGA9 [UCSC Family Browser]
SOURCE	NM_002207
SMD	Hs.113157
SAGE	Hs.113157
GO	receptor activity [Amigo]  receptor activity
GO	calcium ion binding [Amigo]  calcium ion binding
GO	protein binding [Amigo]  protein binding
GO	cell adhesion [Amigo]  cell adhesion
GO	integrin-mediated signaling pathway [Amigo]  integrin-mediated signaling pathway
GO	integrin complex [Amigo]  integrin complex
GO	membrane [Amigo]  membrane
GO	integral to membrane [Amigo]  integral to membrane
KEGG	Focal adhesion
KEGG	ECM-receptor interaction
KEGG	Cell adhesion molecules (CAMs)
KEGG	Regulation of actin cytoskeleton
PubGene	ITGA9
TreeFam	ITGA9
CTD	3680 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	ITGA9 Related clones (RZPD - Berlin)
	PubMed
PubMed	14 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:47:03 2008