Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ITGA9 (integrin, alpha 9)

Identity

Other namesALPHA-RLC
ITGA4L
RLC
HGNC (Hugo) ITGA9
LocusID (NCBI) 3680
Location 3p22.2
Location_base_pair Starts at 37493813 and ends at 37861281 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ITGA9   6145
Entrez_Gene (NCBI)ITGA9  3680  integrin, alpha 9
Cards
GeneCards (Weizmann)ITGA9
Ensembl (Hinxton) [Gene_View]  chr3:37493813-37861281 [Contig_View]  ITGA9 [Vega]
AceView (NCBI)ITGA9
Genatlas (Paris)ITGA9
SOURCE (Stanford)NM_002207
Genomic and cartography
GoldenPath (UCSC)ITGA9  -  3p22.2   chr3:37493813-37861281 +  3p22.2   [Description]    (hg19-Feb_2009)
EnsemblITGA9 - 3p22.2 [CytoView]
Mapping of homologs : NCBIITGA9 [Mapview]
OMIM603963   
Gene and transcription
Genbank (Entrez)AK026826 AK123884 BC030198 BX647350 D25303
RefSeq transcript (SRS)NM_002207
RefSeq transcript (Entrez)NM_002207
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NG_016166 NT_022517 NW_001838877 NW_004078011
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NG_016166 NT_022517 NW_001838877 NW_004078011
Consensus coding sequences : CCDS (NCBI)ITGA9
Cluster EST : UnigeneHs.113157 [ SRS ] Hs.113157 [ NCBI ]
CGAP (NCI)Hs.113157
Alternative Splicing : Fast-db (Paris)GSHG0020697
Gene ExpressionITGA9 [ NCBI-GEO ]   ITGA9 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13797 (SRS) Q13797 (Uniprot)
NextProtQ13797
With graphics : InterProQ13797
Splice isoforms : SwissVarQ13797(Swissvar)
Domaine pattern : Prosite (SRS)FG_GAP (PS51470)    INTEGRIN_ALPHA (PS00242)   
Domaine pattern : Prosite (Expaxy)FG_GAP (PS51470)    INTEGRIN_ALPHA (PS00242)   
Domains : Interpro (SRS)FG-GAP    Int_alpha_beta-p    Integrin_alpha    Integrin_alpha-2    Integrin_alpha_C_CS   
Domains : Interpro (EBI)FG-GAP    Int_alpha_beta-p    Integrin_alpha    Integrin_alpha-2    Integrin_alpha_C_CS   
Related proteins : CluSTrQ13797
Domain families : Pfam (SRS)FG-GAP (PF01839)    Integrin_alpha2 (PF08441)   
Domain families : Pfam (Sanger)FG-GAP (PF01839)    Integrin_alpha2 (PF08441)   
Domain families : Pfam (NCBI)pfam01839    pfam08441   
Domain families : Smart (EMBL)Int_alpha (SM00191)  
DMDM3680
Blocks (Seattle)Q13797
HPRD04910
IPIIPI00015181   IPI00927444   IPI00927265   
Protein Interaction databases
DIP (DOE-UCLA)Q13797
IntAct (EBI)Q13797
REACTOMEITGA9
Protein Interaction Database3680
BioGRIDITGA9
InParanoidQ13797
Interologous Interaction database Q13797
IntegromeDBITGA9
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ITGA9
SNP (GeneSNP Utah)ITGA9
SNP : HGBaseITGA9
Genetic variants : HAPMAPITGA9
Somatic Mutations in Cancer : COSMICITGA9 
CONAN: Copy Number AnalysisITGA9 
Mutations and Diseases : HGMDITGA9
OMIM603963   
GENETests603963   
Disease Genetic AssociationITGA9
Huge Navigator ITGA9 [HugePedia]  ITGA9 [HugeCancerGEM]
Genomic VariantsITGA9  ITGA9 [DGVbeta]
ClinVarITGA9
snp3D : Map Gene to Disease3680
General knowledge
Homologs : HomoloGeneITGA9
Homology/Alignments : Family Browser (UCSC)ITGA9
Phylogenetic Trees/Animal Genes : TreeFamITGA9
Chemical/Protein Interactions : CTD3680
Chemical/Pharm GKB GenePA29945
Clinical trialITGA9
Ontology : AmiGOplasma membrane  cell adhesion  integrin-mediated signaling pathway  axon guidance  integrin complex  basal plasma membrane  neutrophil chemotaxis  metal ion binding  
Ontology : EGO-EBIplasma membrane  cell adhesion  integrin-mediated signaling pathway  axon guidance  integrin complex  basal plasma membrane  neutrophil chemotaxis  metal ion binding  
Pathways : KEGGFocal adhesionCell adhesion molecules (CAMs)ECM-receptor interactionRegulation of actin cytoskeleton
Other databases
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
PubGeneITGA9
iHOPITGA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:44:03 CEST 2013
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