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ITGAD (integrin subunit alpha D)

Identity

Alias_namesintegrin
Alias_symbol (synonym)CD11d
ADB2
Other aliasCD11D
HGNC (Hugo) ITGAD
LocusID (NCBI) 3681
Atlas_Id 41011
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 31393312 and ends at 31426505 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ITGAD   6146
Cards
Entrez_Gene (NCBI)ITGAD  3681  integrin subunit alpha D
AliasesADB2; CD11D
GeneCards (Weizmann)ITGAD
Ensembl hg19 (Hinxton)ENSG00000156886 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156886 [Gene_View]  chr16:31393312-31426505 [Contig_View]  ITGAD [Vega]
ICGC DataPortalENSG00000156886
TCGA cBioPortalITGAD
AceView (NCBI)ITGAD
Genatlas (Paris)ITGAD
WikiGenes3681
SOURCE (Princeton)ITGAD
Genetics Home Reference (NIH)ITGAD
Genomic and cartography
GoldenPath hg38 (UCSC)ITGAD  -     chr16:31393312-31426505 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ITGAD  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblITGAD - 16p11.2 [CytoView hg19]  ITGAD - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIITGAD [Mapview hg19]  ITGAD [Mapview hg38]
OMIM602453   
Gene and transcription
Genbank (Entrez)AB208945 AK097160 AK301028 BC156095 U37028
RefSeq transcript (Entrez)NM_001318185 NM_005353
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ITGAD
Cluster EST : UnigeneHs.679163 [ NCBI ]
CGAP (NCI)Hs.679163
Alternative Splicing GalleryENSG00000156886
Gene ExpressionITGAD [ NCBI-GEO ]   ITGAD [ EBI - ARRAY_EXPRESS ]   ITGAD [ SEEK ]   ITGAD [ MEM ]
Gene Expression Viewer (FireBrowse)ITGAD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3681
GTEX Portal (Tissue expression)ITGAD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13349   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13349  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13349
Splice isoforms : SwissVarQ13349
PhosPhoSitePlusQ13349
Domaine pattern : Prosite (Expaxy)FG_GAP (PS51470)    INTEGRIN_ALPHA (PS00242)    VWFA (PS50234)   
Domains : Interpro (EBI)FG-GAP    Int_alpha_beta-p    Integrin_alpha    Integrin_alpha-2    Integrin_alpha_C_CS    Integrin_dom    VWF_A   
Domain families : Pfam (Sanger)FG-GAP (PF01839)    Integrin_alpha (PF00357)    Integrin_alpha2 (PF08441)    VWA (PF00092)   
Domain families : Pfam (NCBI)pfam01839    pfam00357    pfam08441    pfam00092   
Domain families : Smart (EMBL)Int_alpha (SM00191)  VWA (SM00327)  
Conserved Domain (NCBI)ITGAD
DMDM Disease mutations3681
Blocks (Seattle)ITGAD
SuperfamilyQ13349
Human Protein AtlasENSG00000156886
Peptide AtlasQ13349
IPIIPI00942758   IPI00185879   IPI00968161   
Protein Interaction databases
DIP (DOE-UCLA)Q13349
IntAct (EBI)Q13349
FunCoupENSG00000156886
BioGRIDITGAD
STRING (EMBL)ITGAD
ZODIACITGAD
Ontologies - Pathways
QuickGOQ13349
Ontology : AmiGOplasma membrane  immune response  integrin-mediated signaling pathway  integrin complex  cell surface  extracellular matrix organization  heterotypic cell-cell adhesion  metal ion binding  
Ontology : EGO-EBIplasma membrane  immune response  integrin-mediated signaling pathway  integrin complex  cell surface  extracellular matrix organization  heterotypic cell-cell adhesion  metal ion binding  
Pathways : KEGGRegulation of actin cytoskeleton   
NDEx NetworkITGAD
Atlas of Cancer Signalling NetworkITGAD
Wikipedia pathwaysITGAD
Orthology - Evolution
OrthoDB3681
GeneTree (enSembl)ENSG00000156886
Phylogenetic Trees/Animal Genes : TreeFamITGAD
HOVERGENQ13349
HOGENOMQ13349
Homologs : HomoloGeneITGAD
Homology/Alignments : Family Browser (UCSC)ITGAD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerITGAD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ITGAD
dbVarITGAD
ClinVarITGAD
1000_GenomesITGAD 
Exome Variant ServerITGAD
ExAC (Exome Aggregation Consortium)ITGAD (select the gene name)
Genetic variants : HAPMAP3681
Genomic Variants (DGV)ITGAD [DGVbeta]
DECIPHERITGAD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisITGAD 
Mutations
ICGC Data PortalITGAD 
TCGA Data PortalITGAD 
Broad Tumor PortalITGAD
OASIS PortalITGAD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICITGAD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDITGAD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ITGAD
DgiDB (Drug Gene Interaction Database)ITGAD
DoCM (Curated mutations)ITGAD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ITGAD (select a term)
intoGenITGAD
Cancer3DITGAD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602453   
Orphanet
MedgenITGAD
Genetic Testing Registry ITGAD
NextProtQ13349 [Medical]
TSGene3681
GENETestsITGAD
Huge Navigator ITGAD [HugePedia]
snp3D : Map Gene to Disease3681
BioCentury BCIQITGAD
ClinGenITGAD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3681
Chemical/Pharm GKB GenePA29946
Clinical trialITGAD
Miscellaneous
canSAR (ICR)ITGAD (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineITGAD
EVEXITGAD
GoPubMedITGAD
iHOPITGAD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:20:51 CEST 2017

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