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ITGAE (integrin subunit alpha E)

Identity

Alias_namesintegrin
Alias_symbol (synonym)CD103
HUMINAE
Other alias
HGNC (Hugo) ITGAE
LocusID (NCBI) 3682
Atlas_Id 41012
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 3714625 and ends at 3801243 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ITGAE (17p13.2) / CALHM2 (10q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ITGAE   6147
Cards
Entrez_Gene (NCBI)ITGAE  3682  integrin subunit alpha E
AliasesCD103; HUMINAE
GeneCards (Weizmann)ITGAE
Ensembl hg19 (Hinxton)ENSG00000083457 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083457 [Gene_View]  chr17:3714625-3801243 [Contig_View]  ITGAE [Vega]
ICGC DataPortalENSG00000083457
TCGA cBioPortalITGAE
AceView (NCBI)ITGAE
Genatlas (Paris)ITGAE
WikiGenes3682
SOURCE (Princeton)ITGAE
Genetics Home Reference (NIH)ITGAE
Genomic and cartography
GoldenPath hg38 (UCSC)ITGAE  -     chr17:3714625-3801243 -  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ITGAE  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblITGAE - 17p13.2 [CytoView hg19]  ITGAE - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIITGAE [Mapview hg19]  ITGAE [Mapview hg38]
OMIM604682   
Gene and transcription
Genbank (Entrez)AF289864 AK097567 BC113436 BC117207 CD368046
RefSeq transcript (Entrez)NM_002208
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ITGAE
Cluster EST : UnigeneHs.513867 [ NCBI ]
CGAP (NCI)Hs.513867
Alternative Splicing GalleryENSG00000083457
Gene ExpressionITGAE [ NCBI-GEO ]   ITGAE [ EBI - ARRAY_EXPRESS ]   ITGAE [ SEEK ]   ITGAE [ MEM ]
Gene Expression Viewer (FireBrowse)ITGAE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3682
GTEX Portal (Tissue expression)ITGAE
Protein : pattern, domain, 3D structure
UniProt/SwissProtP38570   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP38570  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP38570
Splice isoforms : SwissVarP38570
PhosPhoSitePlusP38570
Domaine pattern : Prosite (Expaxy)FG_GAP (PS51470)    INTEGRIN_ALPHA (PS00242)    VWFA (PS50234)   
Domains : Interpro (EBI)FG-GAP    Int_alpha_beta-p    Integrin_alpha    Integrin_alpha-2    Integrin_alpha_C_CS    Integrin_dom    VWF_A   
Domain families : Pfam (Sanger)FG-GAP (PF01839)    Integrin_alpha (PF00357)    Integrin_alpha2 (PF08441)    VWA (PF00092)   
Domain families : Pfam (NCBI)pfam01839    pfam00357    pfam08441    pfam00092   
Domain families : Smart (EMBL)Int_alpha (SM00191)  VWA (SM00327)  
Conserved Domain (NCBI)ITGAE
DMDM Disease mutations3682
Blocks (Seattle)ITGAE
SuperfamilyP38570
Human Protein AtlasENSG00000083457
Peptide AtlasP38570
HPRD05249
IPIIPI00007205   
Protein Interaction databases
DIP (DOE-UCLA)P38570
IntAct (EBI)P38570
FunCoupENSG00000083457
BioGRIDITGAE
STRING (EMBL)ITGAE
ZODIACITGAE
Ontologies - Pathways
QuickGOP38570
Ontology : AmiGOplasma membrane  cell adhesion  integrin-mediated signaling pathway  integrin complex  external side of plasma membrane  extracellular matrix organization  metal ion binding  
Ontology : EGO-EBIplasma membrane  cell adhesion  integrin-mediated signaling pathway  integrin complex  external side of plasma membrane  extracellular matrix organization  metal ion binding  
Pathways : KEGGRegulation of actin cytoskeleton   
NDEx NetworkITGAE
Atlas of Cancer Signalling NetworkITGAE
Wikipedia pathwaysITGAE
Orthology - Evolution
OrthoDB3682
GeneTree (enSembl)ENSG00000083457
Phylogenetic Trees/Animal Genes : TreeFamITGAE
HOVERGENP38570
HOGENOMP38570
Homologs : HomoloGeneITGAE
Homology/Alignments : Family Browser (UCSC)ITGAE
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerITGAE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ITGAE
dbVarITGAE
ClinVarITGAE
1000_GenomesITGAE 
Exome Variant ServerITGAE
ExAC (Exome Aggregation Consortium)ITGAE (select the gene name)
Genetic variants : HAPMAP3682
Genomic Variants (DGV)ITGAE [DGVbeta]
DECIPHERITGAE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisITGAE 
Mutations
ICGC Data PortalITGAE 
TCGA Data PortalITGAE 
Broad Tumor PortalITGAE
OASIS PortalITGAE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICITGAE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDITGAE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ITGAE
DgiDB (Drug Gene Interaction Database)ITGAE
DoCM (Curated mutations)ITGAE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ITGAE (select a term)
intoGenITGAE
Cancer3DITGAE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604682   
Orphanet
MedgenITGAE
Genetic Testing Registry ITGAE
NextProtP38570 [Medical]
TSGene3682
GENETestsITGAE
Target ValidationITGAE
Huge Navigator ITGAE [HugePedia]
snp3D : Map Gene to Disease3682
BioCentury BCIQITGAE
ClinGenITGAE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3682
Chemical/Pharm GKB GenePA29947
Clinical trialITGAE
Miscellaneous
canSAR (ICR)ITGAE (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineITGAE
EVEXITGAE
GoPubMedITGAE
iHOPITGAE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:38:54 CEST 2017

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