Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ITGB1 (integrin subunit beta 1)

Identity

Alias (NCBI)CD29
FNRB
GPIIA
MDF2
MSK12
VLA-BETA
VLAB
HGNC (Hugo) ITGB1
HGNC Alias symbCD29
GPIIA
HGNC Previous nameFNRB
 MSK12
 MDF2
HGNC Previous nameintegrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
LocusID (NCBI) 3688
Atlas_Id 41017
Location 10p11.22  [Link to chromosome band 10p11]
Location_base_pair Starts at 32900318 and ends at 32957894 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAPZB (1p36.13) / ITGB1 (10p11.22)CCDC117 (22q12.1) / ITGB1 (10p11.22)ITGB1 (10p11.22) / ITGB1 (10p11.22)
ITGB1 (10p11.22) / MYL9 (20q11.23)ITGB1 (10p11.22) / ZNF717 (3p12.3)NRP1 (10p11.22) / ITGB1 (10p11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ITGB1   6153
Cards
Entrez_Gene (NCBI)ITGB1    integrin subunit beta 1
AliasesCD29; FNRB; GPIIA; MDF2; 
MSK12; VLA-BETA; VLAB
GeneCards (Weizmann)ITGB1
Ensembl hg19 (Hinxton)ENSG00000150093 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150093 [Gene_View]  ENSG00000150093 [Sequence]  chr10:32900318-32957894 [Contig_View]  ITGB1 [Vega]
ICGC DataPortalENSG00000150093
TCGA cBioPortalITGB1
AceView (NCBI)ITGB1
Genatlas (Paris)ITGB1
SOURCE (Princeton)ITGB1
Genetics Home Reference (NIH)ITGB1
Genomic and cartography
GoldenPath hg38 (UCSC)ITGB1  -     chr10:32900318-32957894 -  10p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ITGB1  -     10p11.22   [Description]    (hg19-Feb_2009)
GoldenPathITGB1 - 10p11.22 [CytoView hg19]  ITGB1 - 10p11.22 [CytoView hg38]
ImmunoBaseENSG00000150093
Genome Data Viewer NCBIITGB1 [Mapview hg19]  
OMIM135630   
Gene and transcription
Genbank (Entrez)AI261443 AK291697 AL710802 BC020057 BC113901
RefSeq transcript (Entrez)NM_002211 NM_033666 NM_033667 NM_033668 NM_033669 NM_133376
Consensus coding sequences : CCDS (NCBI)ITGB1
Gene ExpressionITGB1 [ NCBI-GEO ]   ITGB1 [ EBI - ARRAY_EXPRESS ]   ITGB1 [ SEEK ]   ITGB1 [ MEM ]
Gene Expression Viewer (FireBrowse)ITGB1 [ Firebrowse - Broad ]
GenevisibleExpression of ITGB1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3688
GTEX Portal (Tissue expression)ITGB1
Human Protein AtlasENSG00000150093-ITGB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ITGB1
Human Protein Atlas [tissue]ENSG00000150093-ITGB1 [tissue]
HPRD00628
Protein Interaction databases
BioGRIDITGB1
STRING (EMBL)ITGB1
ZODIACITGB1
Ontologies - Pathways
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXITGB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:14:20 CEST 2021
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