Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ITGB3 (integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61))

Identity

Other namesBDPLT2
CD61
GP3A
GPIIIa
GT
HGNC (Hugo) ITGB3
LocusID (NCBI) 3690
Location 17q21.32
Location_base_pair Starts at 45331208 and ends at 45390077 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ITGB3   6156
Entrez_Gene (NCBI)ITGB3  3690  integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)
Cards
GeneCards (Weizmann)ITGB3
Ensembl (Hinxton)ENSG00000259207 [Gene_View]  chr17:45331208-45390077 [Contig_View]  ITGB3 [Vega]
AceView (NCBI)ITGB3
Genatlas (Paris)ITGB3
SOURCE (Stanford)NM_000212
Genomic and cartography
GoldenPath (UCSC)ITGB3  -  17q21.32   chr17:45331208-45390077 +  17q21.32   [Description]    (hg19-Feb_2009)
EnsemblITGB3 - 17q21.32 [CytoView]
Mapping of homologs : NCBIITGB3 [Mapview]
OMIM173470   273800   608446   
Gene and transcription
Genbank (Entrez)AY826979 BC127666 BC127667 BE389074 BE893993
RefSeq transcript (SRS)NM_000212
RefSeq transcript (Entrez)NM_000212
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NG_008332 NT_010783 NW_001838448 NW_004078092
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_008332 NT_010783 NW_001838448 NW_004078092
Consensus coding sequences : CCDS (NCBI)ITGB3
Cluster EST : UnigeneHs.218040 [ SRS ] Hs.218040 [ NCBI ]
CGAP (NCI)Hs.218040
Alternative Splicing : Fast-db (Paris)GSHG0012584
Alternative Splicing GalleryENSG00000259207
Gene ExpressionITGB3 [ NCBI-GEO ]   ITGB3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05106 (SRS) P05106 (Uniprot)
NextProtP05106
With graphics : InterProP05106
Splice isoforms : SwissVarP05106(Swissvar)
Domaine pattern : Prosite (SRS)EGF_1 (PS00022)    EGF_2 (PS01186)    INTEGRIN_BETA (PS00243)    VWFA (PS50234)   
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    INTEGRIN_BETA (PS00243)    VWFA (PS50234)   
Domains : Interpro (SRS)Integrin_bsu    Integrin_bsu_cyt    Integrin_bsu_N    Integrin_bsu_tail    Plexin-like    Plexin-like_fold    VWF_A   
Domains : Interpro (EBI)Integrin_bsu    Integrin_bsu_cyt    Integrin_bsu_N    Integrin_bsu_tail    Plexin-like    Plexin-like_fold    VWF_A   
Related proteins : CluSTrP05106
Domain families : Pfam (SRS)Integrin_b_cyt (PF08725)    Integrin_B_tail (PF07965)    Integrin_beta (PF00362)   
Domain families : Pfam (Sanger)Integrin_b_cyt (PF08725)    Integrin_B_tail (PF07965)    Integrin_beta (PF00362)   
Domain families : Pfam (NCBI)pfam08725    pfam07965    pfam00362   
Domain families : Smart (EMBL)INB (SM00187)  PSI (SM00423)  VWA (SM00327)  
DMDM3690
Blocks (Seattle)P05106
PDB (SRS)1JV2    1KUP    1KUZ    1L5G    1M1X    1M8O    1MK7    1MK9    1RN0    1S4X    1TYE    1U8C    2INI    2K9J    2KNC    2KV9    2L1C    2L91    2LJD    2LJE    2LJF    2Q6W    2RMZ    2RN0    2VC2    2VDK    2VDL    2VDM    2VDN    2VDO    2VDP    2VDQ    2VDR    3FCS    3FCU    3IJE    3NID    3NIF    3NIG    3T3M    3T3P   
PDB (PDBSum)1JV2    1KUP    1KUZ    1L5G    1M1X    1M8O    1MK7    1MK9    1RN0    1S4X    1TYE    1U8C    2INI    2K9J    2KNC    2KV9    2L1C    2L91    2LJD    2LJE    2LJF    2Q6W    2RMZ    2RN0    2VC2    2VDK    2VDL    2VDM    2VDN    2VDO    2VDP    2VDQ    2VDR    3FCS    3FCU    3IJE    3NID    3NIF    3NIG    3T3M    3T3P   
PDB (IMB)1JV2    1KUP    1KUZ    1L5G    1M1X    1M8O    1MK7    1MK9    1RN0    1S4X    1TYE    1U8C    2INI    2K9J    2KNC    2KV9    2L1C    2L91    2LJD    2LJE    2LJF    2Q6W    2RMZ    2RN0    2VC2    2VDK    2VDL    2VDM    2VDN    2VDO    2VDP    2VDQ    2VDR    3FCS    3FCU    3IJE    3NID    3NIF    3NIG    3T3M    3T3P   
PDB (RSDB)1JV2    1KUP    1KUZ    1L5G    1M1X    1M8O    1MK7    1MK9    1RN0    1S4X    1TYE    1U8C    2INI    2K9J    2KNC    2KV9    2L1C    2L91    2LJD    2LJE    2LJF    2Q6W    2RMZ    2RN0    2VC2    2VDK    2VDL    2VDM    2VDN    2VDO    2VDP    2VDQ    2VDR    3FCS    3FCU    3IJE    3NID    3NIF    3NIG    3T3M    3T3P   
Human Protein AtlasENSG00000259207
HPRD01428
IPIIPI00303283   IPI00220350   IPI00220351   IPI00786871   
Protein Interaction databases
DIP (DOE-UCLA)P05106
IntAct (EBI)P05106
FunCoupENSG00000259207
REACTOMEITGB3
Protein Interaction Database3690
BioGRIDITGB3
InParanoidP05106
Interologous Interaction database P05106
IntegromeDBITGB3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ITGB3
SNP (GeneSNP Utah)ITGB3
SNP : HGBaseITGB3
Genetic variants : HAPMAPITGB3
Somatic Mutations in Cancer : COSMICITGB3 
CONAN: Copy Number AnalysisITGB3 
Mutations and Diseases : HGMDITGB3
OMIM173470    273800    608446   
GENETests173470    273800    608446   
Disease Genetic AssociationITGB3
Huge Navigator ITGB3 [HugePedia]  ITGB3 [HugeCancerGEM]
Genomic VariantsITGB3  ITGB3 [DGVbeta]
snp3D : Map Gene to Disease3690
General knowledge
Homologs : HomoloGeneITGB3
Homology/Alignments : Family Browser (UCSC)ITGB3
Phylogenetic Trees/Animal Genes : TreeFamITGB3
Chemical/Protein Interactions : CTD3690
Chemical/Pharm GKB GenePA205
Clinical trialITGB3
Cancer Resource (Charite)ENSG00000259207
Ontology : AmiGOpositive regulation of protein phosphorylation  positive regulation of endothelial cell proliferation  platelet degranulation  protein disulfide isomerase activity  receptor activity  platelet-derived growth factor receptor binding  protein binding  nucleus  plasma membrane  plasma membrane  integral to plasma membrane  protein folding  cell adhesion  cell-matrix adhesion  integrin-mediated signaling pathway  axon guidance  blood coagulation  integrin complex  positive regulation of endothelial cell migration  negative regulation of macrophage derived foam cell differentiation  negative regulation of lipid storage  smooth muscle cell migration  virus-host interaction  platelet activation  platelet activation  positive regulation of vascular endothelial growth factor receptor signaling pathway  platelet alpha granule membrane  activation of protein kinase activity  negative regulation of lipid transport  tube development  wound healing  melanosome  identical protein binding  vascular endothelial growth factor receptor 2 binding  vascular endothelial growth factor receptor 2 binding  regulation of bone resorption  negative regulation of low-density lipoprotein particle receptor biosynthetic process  positive regulation of peptidyl-tyrosine phosphorylation  negative regulation of lipoprotein metabolic process  cell adhesion molecule binding  leukocyte migration  angiogenesis involved in wound healing  platelet aggregation  alphav-beta3 integrin-vitronectin complex  
Ontology : EGO-EBIpositive regulation of protein phosphorylation  positive regulation of endothelial cell proliferation  platelet degranulation  protein disulfide isomerase activity  receptor activity  platelet-derived growth factor receptor binding  protein binding  nucleus  plasma membrane  plasma membrane  integral to plasma membrane  protein folding  cell adhesion  cell-matrix adhesion  integrin-mediated signaling pathway  axon guidance  blood coagulation  integrin complex  positive regulation of endothelial cell migration  negative regulation of macrophage derived foam cell differentiation  negative regulation of lipid storage  smooth muscle cell migration  virus-host interaction  platelet activation  platelet activation  positive regulation of vascular endothelial growth factor receptor signaling pathway  platelet alpha granule membrane  activation of protein kinase activity  negative regulation of lipid transport  tube development  wound healing  melanosome  identical protein binding  vascular endothelial growth factor receptor 2 binding  vascular endothelial growth factor receptor 2 binding  regulation of bone resorption  negative regulation of low-density lipoprotein particle receptor biosynthetic process  positive regulation of peptidyl-tyrosine phosphorylation  negative regulation of lipoprotein metabolic process  cell adhesion molecule binding  leukocyte migration  angiogenesis involved in wound healing  platelet aggregation  alphav-beta3 integrin-vitronectin complex  
Pathways : BIOCARTAPhospholipids as signalling intermediaries [Genes]    uCalpain and friends in Cell spread [Genes]   
Pathways : KEGGFocal adhesionHematopoietic cell lineageRegulation of actin cytoskeletonECM-receptor interaction
Other databases
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
PubGeneITGB3
iHOPITGB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:36:22 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.