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ITGBL1 (integrin subunit beta like 1)

Identity

Alias (NCBI)OSCP
TIED
HGNC (Hugo) ITGBL1
HGNC Alias symbTIED
OSCP
HGNC Alias nameten integrin EGF-like repeat domains protein
 ITGBL1, integrin beta-like 1
HGNC Previous nameintegrin, beta-like 1 (with EGF-like repeat domains)
LocusID (NCBI) 9358
Atlas_Id 55539
Location 13q33.1  [Link to chromosome band 13q33]
Location_base_pair Starts at 101452675 and ends at 101716446 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ITGBL1   6164
Cards
Entrez_Gene (NCBI)ITGBL1    integrin subunit beta like 1
AliasesOSCP; TIED
GeneCards (Weizmann)ITGBL1
Ensembl hg19 (Hinxton)ENSG00000198542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198542 [Gene_View]  ENSG00000198542 [Sequence]  chr13:101452675-101716446 [Contig_View]  ITGBL1 [Vega]
ICGC DataPortalENSG00000198542
TCGA cBioPortalITGBL1
AceView (NCBI)ITGBL1
Genatlas (Paris)ITGBL1
SOURCE (Princeton)ITGBL1
Genetics Home Reference (NIH)ITGBL1
Genomic and cartography
GoldenPath hg38 (UCSC)ITGBL1  -     chr13:101452675-101716446 +  13q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ITGBL1  -     13q33.1   [Description]    (hg19-Feb_2009)
GoldenPathITGBL1 - 13q33.1 [CytoView hg19]  ITGBL1 - 13q33.1 [CytoView hg38]
ImmunoBaseENSG00000198542
Genome Data Viewer NCBIITGBL1 [Mapview hg19]  
OMIM604234   
Gene and transcription
Genbank (Entrez)AB008375 AF072752 AK026784 AK075136 AK095875
RefSeq transcript (Entrez)NM_001271754 NM_001271755 NM_001271756 NM_004791
Consensus coding sequences : CCDS (NCBI)ITGBL1
Gene ExpressionITGBL1 [ NCBI-GEO ]   ITGBL1 [ EBI - ARRAY_EXPRESS ]   ITGBL1 [ SEEK ]   ITGBL1 [ MEM ]
Gene Expression Viewer (FireBrowse)ITGBL1 [ Firebrowse - Broad ]
GenevisibleExpression of ITGBL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9358
GTEX Portal (Tissue expression)ITGBL1
Human Protein AtlasENSG00000198542-ITGBL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95965   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95965  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95965
PhosPhoSitePlusO95965
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    INTEGRIN_BETA (PS00243)   
Domains : Interpro (EBI)EGF-like_dom    EGF_extracell    Integrin_b-like_p1    Integrin_bsu   
Domain families : Pfam (Sanger)EGF_2 (PF07974)   
Domain families : Pfam (NCBI)pfam07974   
Domain families : Smart (EMBL)EGF (SM00181)  
Conserved Domain (NCBI)ITGBL1
SuperfamilyO95965
AlphaFold pdb e-kbO95965   
Human Protein Atlas [tissue]ENSG00000198542-ITGBL1 [tissue]
HPRD07253
Protein Interaction databases
DIP (DOE-UCLA)O95965
IntAct (EBI)O95965
BioGRIDITGBL1
STRING (EMBL)ITGBL1
ZODIACITGBL1
Ontologies - Pathways
QuickGOO95965
Ontology : AmiGOintegrin binding  extracellular region  plasma membrane  focal adhesion  cell adhesion  cell-matrix adhesion  integrin-mediated signaling pathway  integrin complex  cell surface  cell migration  cell adhesion mediated by integrin  
Ontology : EGO-EBIintegrin binding  extracellular region  plasma membrane  focal adhesion  cell adhesion  cell-matrix adhesion  integrin-mediated signaling pathway  integrin complex  cell surface  cell migration  cell adhesion mediated by integrin  
NDEx NetworkITGBL1
Atlas of Cancer Signalling NetworkITGBL1
Wikipedia pathwaysITGBL1
Orthology - Evolution
OrthoDB9358
GeneTree (enSembl)ENSG00000198542
Phylogenetic Trees/Animal Genes : TreeFamITGBL1
Homologs : HomoloGeneITGBL1
Homology/Alignments : Family Browser (UCSC)ITGBL1
Gene fusions - Rearrangements
Fusion : QuiverITGBL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerITGBL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ITGBL1
dbVarITGBL1
ClinVarITGBL1
MonarchITGBL1
1000_GenomesITGBL1 
Exome Variant ServerITGBL1
GNOMAD BrowserENSG00000198542
Varsome BrowserITGBL1
ACMGITGBL1 variants
VarityO95965
Genomic Variants (DGV)ITGBL1 [DGVbeta]
DECIPHERITGBL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisITGBL1 
Mutations
ICGC Data PortalITGBL1 
TCGA Data PortalITGBL1 
Broad Tumor PortalITGBL1
OASIS PortalITGBL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICITGBL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DITGBL1
Mutations and Diseases : HGMDITGBL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaITGBL1
DgiDB (Drug Gene Interaction Database)ITGBL1
DoCM (Curated mutations)ITGBL1
CIViC (Clinical Interpretations of Variants in Cancer)ITGBL1
Cancer3DITGBL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604234   
Orphanet
DisGeNETITGBL1
MedgenITGBL1
Genetic Testing Registry ITGBL1
NextProtO95965 [Medical]
GENETestsITGBL1
Target ValidationITGBL1
Huge Navigator ITGBL1 [HugePedia]
ClinGenITGBL1
Clinical trials, drugs, therapy
MyCancerGenomeITGBL1
Protein Interactions : CTDITGBL1
Pharm GKB GenePA29963
PharosO95965
Clinical trialITGBL1
Miscellaneous
canSAR (ICR)ITGBL1
HarmonizomeITGBL1
DataMed IndexITGBL1
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXITGBL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:14:22 CEST 2021

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