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ITGBL1 (integrin subunit beta like 1)

Identity

Alias_namesintegrin
Alias_symbol (synonym)TIED
OSCP
Other alias
HGNC (Hugo) ITGBL1
LocusID (NCBI) 9358
Atlas_Id 55539
Location 13q33.1  [Link to chromosome band 13q33]
Location_base_pair Starts at 102104944 and ends at 102373207 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ITGBL1   6164
Cards
Entrez_Gene (NCBI)ITGBL1  9358  integrin subunit beta like 1
AliasesOSCP; TIED
GeneCards (Weizmann)ITGBL1
Ensembl hg19 (Hinxton)ENSG00000198542 [Gene_View]  chr13:102104944-102373207 [Contig_View]  ITGBL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198542 [Gene_View]  chr13:102104944-102373207 [Contig_View]  ITGBL1 [Vega]
ICGC DataPortalENSG00000198542
TCGA cBioPortalITGBL1
AceView (NCBI)ITGBL1
Genatlas (Paris)ITGBL1
WikiGenes9358
SOURCE (Princeton)ITGBL1
Genetics Home Reference (NIH)ITGBL1
Genomic and cartography
GoldenPath hg19 (UCSC)ITGBL1  -     chr13:102104944-102373207 +  13q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ITGBL1  -     13q33.1   [Description]    (hg38-Dec_2013)
EnsemblITGBL1 - 13q33.1 [CytoView hg19]  ITGBL1 - 13q33.1 [CytoView hg38]
Mapping of homologs : NCBIITGBL1 [Mapview hg19]  ITGBL1 [Mapview hg38]
OMIM604234   
Gene and transcription
Genbank (Entrez)AB008375 AF072752 AK026784 AK075136 AK095875
RefSeq transcript (Entrez)NM_001271754 NM_001271755 NM_001271756 NM_004791
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_009952 NW_004929389
Consensus coding sequences : CCDS (NCBI)ITGBL1
Cluster EST : UnigeneHs.696554 [ NCBI ]
CGAP (NCI)Hs.696554
Alternative Splicing GalleryENSG00000198542
Gene ExpressionITGBL1 [ NCBI-GEO ]   ITGBL1 [ EBI - ARRAY_EXPRESS ]   ITGBL1 [ SEEK ]   ITGBL1 [ MEM ]
Gene Expression Viewer (FireBrowse)ITGBL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9358
GTEX Portal (Tissue expression)ITGBL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95965   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95965  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95965
Splice isoforms : SwissVarO95965
PhosPhoSitePlusO95965
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    INTEGRIN_BETA (PS00243)   
Domains : Interpro (EBI)EGF-like_dom    EGF_extracell    Integrin_b-like_p1    Integrin_bsu   
Domain families : Pfam (Sanger)EGF_2 (PF07974)   
Domain families : Pfam (NCBI)pfam07974   
Domain families : Smart (EMBL)EGF (SM00181)  
Conserved Domain (NCBI)ITGBL1
DMDM Disease mutations9358
Blocks (Seattle)ITGBL1
SuperfamilyO95965
Human Protein AtlasENSG00000198542
Peptide AtlasO95965
HPRD07253
IPIIPI00640865   IPI01011309   IPI00940202   IPI01018875   IPI00844069   
Protein Interaction databases
DIP (DOE-UCLA)O95965
IntAct (EBI)O95965
FunCoupENSG00000198542
BioGRIDITGBL1
STRING (EMBL)ITGBL1
ZODIACITGBL1
Ontologies - Pathways
QuickGOO95965
Ontology : AmiGOextracellular region  cell adhesion  
Ontology : EGO-EBIextracellular region  cell adhesion  
NDEx NetworkITGBL1
Atlas of Cancer Signalling NetworkITGBL1
Wikipedia pathwaysITGBL1
Orthology - Evolution
OrthoDB9358
GeneTree (enSembl)ENSG00000198542
Phylogenetic Trees/Animal Genes : TreeFamITGBL1
HOVERGENO95965
HOGENOMO95965
Homologs : HomoloGeneITGBL1
Homology/Alignments : Family Browser (UCSC)ITGBL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerITGBL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ITGBL1
dbVarITGBL1
ClinVarITGBL1
1000_GenomesITGBL1 
Exome Variant ServerITGBL1
ExAC (Exome Aggregation Consortium)ITGBL1 (select the gene name)
Genetic variants : HAPMAP9358
Genomic Variants (DGV)ITGBL1 [DGVbeta]
DECIPHER (Syndromes)13:102104944-102373207  ENSG00000198542
CONAN: Copy Number AnalysisITGBL1 
Mutations
ICGC Data PortalITGBL1 
TCGA Data PortalITGBL1 
Broad Tumor PortalITGBL1
OASIS PortalITGBL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICITGBL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDITGBL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ITGBL1
DgiDB (Drug Gene Interaction Database)ITGBL1
DoCM (Curated mutations)ITGBL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ITGBL1 (select a term)
intoGenITGBL1
Cancer3DITGBL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604234   
Orphanet
MedgenITGBL1
Genetic Testing Registry ITGBL1
NextProtO95965 [Medical]
TSGene9358
GENETestsITGBL1
Huge Navigator ITGBL1 [HugePedia]
snp3D : Map Gene to Disease9358
BioCentury BCIQITGBL1
ClinGenITGBL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9358
Chemical/Pharm GKB GenePA29963
Clinical trialITGBL1
Miscellaneous
canSAR (ICR)ITGBL1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineITGBL1
EVEXITGBL1
GoPubMedITGBL1
iHOPITGBL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:11:14 CET 2017

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