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ITLN1 (intelectin 1)

Identity

Alias_namesintelectin 1 (galactofuranose binding)
Alias_symbol (synonym)ITLN
FLJ20022
LFR
HL-1
hIntL
Other aliasHL1
INTL
omentin
HGNC (Hugo) ITLN1
LocusID (NCBI) 55600
Atlas_Id 47528
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 160876540 and ends at 160885170 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ITLN1 (1q23.3) / ACSL5 (10q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ITLN1   18259
Cards
Entrez_Gene (NCBI)ITLN1  55600  intelectin 1
AliasesHL-1; HL1; INTL; ITLN; 
LFR; hIntL; omentin
GeneCards (Weizmann)ITLN1
Ensembl hg19 (Hinxton)ENSG00000179914 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179914 [Gene_View]  chr1:160876540-160885170 [Contig_View]  ITLN1 [Vega]
ICGC DataPortalENSG00000179914
TCGA cBioPortalITLN1
AceView (NCBI)ITLN1
Genatlas (Paris)ITLN1
WikiGenes55600
SOURCE (Princeton)ITLN1
Genetics Home Reference (NIH)ITLN1
Genomic and cartography
GoldenPath hg38 (UCSC)ITLN1  -     chr1:160876540-160885170 -  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ITLN1  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblITLN1 - 1q23.3 [CytoView hg19]  ITLN1 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIITLN1 [Mapview hg19]  ITLN1 [Mapview hg38]
OMIM609873   
Gene and transcription
Genbank (Entrez)AB036706 AF271386 AK000029 AK222533 AY065972
RefSeq transcript (Entrez)NM_017625
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ITLN1
Cluster EST : UnigeneHs.50813 [ NCBI ]
CGAP (NCI)Hs.50813
Alternative Splicing GalleryENSG00000179914
Gene ExpressionITLN1 [ NCBI-GEO ]   ITLN1 [ EBI - ARRAY_EXPRESS ]   ITLN1 [ SEEK ]   ITLN1 [ MEM ]
Gene Expression Viewer (FireBrowse)ITLN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55600
GTEX Portal (Tissue expression)ITLN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWA0
Splice isoforms : SwissVarQ8WWA0
PhosPhoSitePlusQ8WWA0
Domaine pattern : Prosite (Expaxy)FIBRINOGEN_C_2 (PS51406)   
Domains : Interpro (EBI)Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ITLN1
DMDM Disease mutations55600
Blocks (Seattle)ITLN1
PDB (SRS)4WMQ    4WMY   
PDB (PDBSum)4WMQ    4WMY   
PDB (IMB)4WMQ    4WMY   
PDB (RSDB)4WMQ    4WMY   
Structural Biology KnowledgeBase4WMQ    4WMY   
SCOP (Structural Classification of Proteins)4WMQ    4WMY   
CATH (Classification of proteins structures)4WMQ    4WMY   
SuperfamilyQ8WWA0
Human Protein AtlasENSG00000179914
Peptide AtlasQ8WWA0
HPRD17165
IPIIPI00291737   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWA0
IntAct (EBI)Q8WWA0
FunCoupENSG00000179914
BioGRIDITLN1
STRING (EMBL)ITLN1
ZODIACITLN1
Ontologies - Pathways
QuickGOQ8WWA0
Ontology : AmiGOpositive regulation of protein phosphorylation  calcium ion binding  extracellular region  response to nematode  antimicrobial humoral response  anchored component of membrane  brush border membrane  receptor complex  membrane raft  positive regulation of glucose import  extracellular exosome  protein homotrimerization  oligosaccharide binding  
Ontology : EGO-EBIpositive regulation of protein phosphorylation  calcium ion binding  extracellular region  response to nematode  antimicrobial humoral response  anchored component of membrane  brush border membrane  receptor complex  membrane raft  positive regulation of glucose import  extracellular exosome  protein homotrimerization  oligosaccharide binding  
NDEx NetworkITLN1
Atlas of Cancer Signalling NetworkITLN1
Wikipedia pathwaysITLN1
Orthology - Evolution
OrthoDB55600
GeneTree (enSembl)ENSG00000179914
Phylogenetic Trees/Animal Genes : TreeFamITLN1
HOVERGENQ8WWA0
HOGENOMQ8WWA0
Homologs : HomoloGeneITLN1
Homology/Alignments : Family Browser (UCSC)ITLN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerITLN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ITLN1
dbVarITLN1
ClinVarITLN1
1000_GenomesITLN1 
Exome Variant ServerITLN1
ExAC (Exome Aggregation Consortium)ITLN1 (select the gene name)
Genetic variants : HAPMAP55600
Genomic Variants (DGV)ITLN1 [DGVbeta]
DECIPHERITLN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisITLN1 
Mutations
ICGC Data PortalITLN1 
TCGA Data PortalITLN1 
Broad Tumor PortalITLN1
OASIS PortalITLN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICITLN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDITLN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ITLN1
DgiDB (Drug Gene Interaction Database)ITLN1
DoCM (Curated mutations)ITLN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ITLN1 (select a term)
intoGenITLN1
Cancer3DITLN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609873   
Orphanet
MedgenITLN1
Genetic Testing Registry ITLN1
NextProtQ8WWA0 [Medical]
TSGene55600
GENETestsITLN1
Target ValidationITLN1
Huge Navigator ITLN1 [HugePedia]
snp3D : Map Gene to Disease55600
BioCentury BCIQITLN1
ClinGenITLN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55600
Chemical/Pharm GKB GenePA134870726
Clinical trialITLN1
Miscellaneous
canSAR (ICR)ITLN1 (select the gene name)
Probes
Litterature
PubMed140 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineITLN1
EVEXITLN1
GoPubMedITLN1
iHOPITLN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:56:40 CEST 2017

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