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ITLN2 (intelectin 2)

Identity

Alias_symbol (synonym)HL-2
Other aliasHL2
HGNC (Hugo) ITLN2
LocusID (NCBI) 142683
Atlas_Id 64691
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 160914816 and ends at 160924589 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ITLN2   20599
Cards
Entrez_Gene (NCBI)ITLN2  142683  intelectin 2
AliasesHL-2; HL2
GeneCards (Weizmann)ITLN2
Ensembl hg19 (Hinxton)ENSG00000158764 [Gene_View]  chr1:160914816-160924589 [Contig_View]  ITLN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000158764 [Gene_View]  chr1:160914816-160924589 [Contig_View]  ITLN2 [Vega]
ICGC DataPortalENSG00000158764
TCGA cBioPortalITLN2
AceView (NCBI)ITLN2
Genatlas (Paris)ITLN2
WikiGenes142683
SOURCE (Princeton)ITLN2
Genetics Home Reference (NIH)ITLN2
Genomic and cartography
GoldenPath hg19 (UCSC)ITLN2  -     chr1:160914816-160924589 -  1q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ITLN2  -     1q23.3   [Description]    (hg38-Dec_2013)
EnsemblITLN2 - 1q23.3 [CytoView hg19]  ITLN2 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIITLN2 [Mapview hg19]  ITLN2 [Mapview hg38]
OMIM609874   
Gene and transcription
Genbank (Entrez)AY065973 AY358905 BC117225 BC143339 BC143341
RefSeq transcript (Entrez)NM_080878
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)ITLN2
Cluster EST : UnigeneHs.385631 [ NCBI ]
CGAP (NCI)Hs.385631
Alternative Splicing GalleryENSG00000158764
Gene ExpressionITLN2 [ NCBI-GEO ]   ITLN2 [ EBI - ARRAY_EXPRESS ]   ITLN2 [ SEEK ]   ITLN2 [ MEM ]
Gene Expression Viewer (FireBrowse)ITLN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)142683
GTEX Portal (Tissue expression)ITLN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWU7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWU7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWU7
Splice isoforms : SwissVarQ8WWU7
PhosPhoSitePlusQ8WWU7
Domaine pattern : Prosite (Expaxy)FIBRINOGEN_C_2 (PS51406)   
Domains : Interpro (EBI)Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_dom   
Domain families : Pfam (Sanger)Fibrinogen_C (PF00147)   
Domain families : Pfam (NCBI)pfam00147   
Domain families : Smart (EMBL)FBG (SM00186)  
Conserved Domain (NCBI)ITLN2
DMDM Disease mutations142683
Blocks (Seattle)ITLN2
SuperfamilyQ8WWU7
Human Protein AtlasENSG00000158764
Peptide AtlasQ8WWU7
HPRD17166
IPIIPI00103436   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWU7
IntAct (EBI)Q8WWU7
FunCoupENSG00000158764
BioGRIDITLN2
STRING (EMBL)ITLN2
ZODIACITLN2
Ontologies - Pathways
QuickGOQ8WWU7
Ontology : AmiGOextracellular region  carbohydrate binding  
Ontology : EGO-EBIextracellular region  carbohydrate binding  
NDEx NetworkITLN2
Atlas of Cancer Signalling NetworkITLN2
Wikipedia pathwaysITLN2
Orthology - Evolution
OrthoDB142683
GeneTree (enSembl)ENSG00000158764
Phylogenetic Trees/Animal Genes : TreeFamITLN2
HOVERGENQ8WWU7
HOGENOMQ8WWU7
Homologs : HomoloGeneITLN2
Homology/Alignments : Family Browser (UCSC)ITLN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerITLN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ITLN2
dbVarITLN2
ClinVarITLN2
1000_GenomesITLN2 
Exome Variant ServerITLN2
ExAC (Exome Aggregation Consortium)ITLN2 (select the gene name)
Genetic variants : HAPMAP142683
Genomic Variants (DGV)ITLN2 [DGVbeta]
DECIPHER (Syndromes)1:160914816-160924589  ENSG00000158764
CONAN: Copy Number AnalysisITLN2 
Mutations
ICGC Data PortalITLN2 
TCGA Data PortalITLN2 
Broad Tumor PortalITLN2
OASIS PortalITLN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICITLN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDITLN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ITLN2
DgiDB (Drug Gene Interaction Database)ITLN2
DoCM (Curated mutations)ITLN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ITLN2 (select a term)
intoGenITLN2
Cancer3DITLN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609874   
Orphanet
MedgenITLN2
Genetic Testing Registry ITLN2
NextProtQ8WWU7 [Medical]
TSGene142683
GENETestsITLN2
Huge Navigator ITLN2 [HugePedia]
snp3D : Map Gene to Disease142683
BioCentury BCIQITLN2
ClinGenITLN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD142683
Chemical/Pharm GKB GenePA134879128
Clinical trialITLN2
Miscellaneous
canSAR (ICR)ITLN2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineITLN2
EVEXITLN2
GoPubMedITLN2
iHOPITLN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:07 CET 2017

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