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ITM2B (integral membrane protein 2B)

Identity

Other namesABRI
BRI
BRI2
BRICD2B
E25B
E3-16
FBD
imBRI2
HGNC (Hugo) ITM2B
LocusID (NCBI) 9445
Location 13q14.2
Location_base_pair Starts at 48807274 and ends at 48836232 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ITM2B   6174
Entrez_Gene (NCBI)ITM2B  9445  integral membrane protein 2B
Cards
GeneCards (Weizmann)ITM2B
Ensembl (Hinxton)ENSG00000136156 [Gene_View]  chr13:48807274-48836232 [Contig_View]  ITM2B [Vega]
AceView (NCBI)ITM2B
Genatlas (Paris)ITM2B
SOURCE (Stanford)NM_021999
Genomic and cartography
GoldenPath (UCSC)ITM2B  -  13q14.2   chr13:48807274-48836232 +  13q14.2   [Description]    (hg19-Feb_2009)
EnsemblITM2B - 13q14.2 [CytoView]
Mapping of homologs : NCBIITM2B [Mapview]
OMIM117300   176500   603904   
Gene and transcription
Genbank (Entrez)AF086918 AF092128 AF136973 AF152462 AF246221
RefSeq transcript (SRS)NM_021999
RefSeq transcript (Entrez)NM_021999
RefSeq genomic (SRS)AC_000145 NC_000013 NC_018924 NG_013069 NT_024524 NW_001838074 NW_004078077
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NG_013069 NT_024524 NW_001838074 NW_004078077
Consensus coding sequences : CCDS (NCBI)ITM2B
Cluster EST : UnigeneHs.643683 [ SRS ] Hs.643683 [ NCBI ]
CGAP (NCI)Hs.643683
Alternative Splicing : Fast-db (Paris)GSHG0008104
Alternative Splicing GalleryENSG00000136156
Gene ExpressionITM2B [ NCBI-GEO ]   ITM2B [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y287 (SRS) Q9Y287 (Uniprot)
NextProtQ9Y287
With graphics : InterProQ9Y287
Splice isoforms : SwissVarQ9Y287(Swissvar)
Domaine pattern : Prosite (SRS)BRICHOS (PS50869)   
Domaine pattern : Prosite (Expaxy)BRICHOS (PS50869)   
Domains : Interpro (SRS)BRICHOS_dom   
Domains : Interpro (EBI)BRICHOS_dom   
Related proteins : CluSTrQ9Y287
Domain families : Pfam (SRS)BRICHOS (PF04089)   
Domain families : Pfam (Sanger)BRICHOS (PF04089)   
Domain families : Pfam (NCBI)pfam04089   
Domain families : Smart (EMBL)BRICHOS (SM01039)  
DMDM9445
Blocks (Seattle)Q9Y287
Human Protein AtlasENSG00000136156
HPRD04878
IPIIPI00031821   IPI00477987   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y287
IntAct (EBI)Q9Y287
FunCoupENSG00000136156
REACTOMEITM2B
Protein Interaction Database9445
BioGRIDITM2B
InParanoidQ9Y287
Interologous Interaction database Q9Y287
IntegromeDBITM2B
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ITM2B
SNP (GeneSNP Utah)ITM2B
SNP : HGBaseITM2B
Genetic variants : HAPMAPITM2B
Somatic Mutations in Cancer : COSMICITM2B 
CONAN: Copy Number AnalysisITM2B 
Mutations and Diseases : HGMDITM2B
OMIM117300    176500    603904   
GENETests117300    176500    603904   
Disease Genetic AssociationITM2B
Huge Navigator ITM2B [HugePedia]  ITM2B [HugeCancerGEM]
Genomic VariantsITM2B  ITM2B [DGVbeta]
ClinVarITM2B
snp3D : Map Gene to Disease9445
General knowledge
Homologs : HomoloGeneITM2B
Homology/Alignments : Family Browser (UCSC)ITM2B
Phylogenetic Trees/Animal Genes : TreeFamITM2B
Chemical/Protein Interactions : CTD9445
Chemical/Pharm GKB GenePA29971
Clinical trialITM2B
Cancer Resource (Charite)ENSG00000136156
Ontology : AmiGObeta-amyloid binding  protein binding  ATP binding  extracellular region  extracellular space  nucleus  Golgi apparatus  plasma membrane  apoptotic process  induction of apoptosis  nervous system development  endosome membrane  Golgi-associated vesicle membrane  integral to organelle membrane  negative regulation of amyloid precursor protein biosynthetic process  intracellular membrane-bounded organelle  
Ontology : EGO-EBIbeta-amyloid binding  protein binding  ATP binding  extracellular region  extracellular space  nucleus  Golgi apparatus  plasma membrane  apoptotic process  induction of apoptosis  nervous system development  endosome membrane  Golgi-associated vesicle membrane  integral to organelle membrane  negative regulation of amyloid precursor protein biosynthetic process  intracellular membrane-bounded organelle  
Other databases
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
PubGeneITM2B
iHOPITM2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:33:07 CEST 2013
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