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ITSN1 (intersectin 1)

Identity

Alias (NCBI)ITSN
SH3D1A
SH3P17
HGNC (Hugo) ITSN1
HGNC Alias symbSH3P17
MGC134948
MGC134949
HGNC Alias nameSH3 domain protein-1A
 human intersectin-SH3 domain-containing protein SH3P17
 Src homology 3 domain-containing protein
 intersectin 1 short form variant, 11
 intersectin 1 short form variant 3
 intersectin short variant 12
HGNC Previous nameSH3D1A
 ITSN
HGNC Previous nameintersectin 1 (SH3 domain protein)
LocusID (NCBI) 6453
Atlas_Id 41028
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 33642501 and ends at 33899861 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLIC6 (21q22.12) / ITSN1 (21q22.11)ITSN1 (21q22.11) / KIAA1211 (4q12)ITSN1 (21q22.11) / MATN1 (1p35.2)
ITSN1 (21q22.11) / NEBL (10p12.31)ITSN1 (21q22.11) / ZNF490 (19p13.2)KIAA1211 (4q12) / ITSN1 (21q22.11)
ZNF490 (19p13.2) / ITSN1 (21q22.11)CLIC6 21q22.12 / ITSN1 21q22.11ITSN1 21q22.11 / KIAA1211 4q12
ITSN1 21q22.11 / NEBL 10p12.31KIAA1211 4q12 / ITSN1 21q22.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(21;21)(q22;q22) ITSN1/KCNE2


External links

Nomenclature
HGNC (Hugo)ITSN1   6183
Cards
Entrez_Gene (NCBI)ITSN1    intersectin 1
AliasesITSN; SH3D1A; SH3P17
GeneCards (Weizmann)ITSN1
Ensembl hg19 (Hinxton)ENSG00000205726 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205726 [Gene_View]  ENSG00000205726 [Sequence]  chr21:33642501-33899861 [Contig_View]  ITSN1 [Vega]
ICGC DataPortalENSG00000205726
TCGA cBioPortalITSN1
AceView (NCBI)ITSN1
Genatlas (Paris)ITSN1
SOURCE (Princeton)ITSN1
Genetics Home Reference (NIH)ITSN1
Genomic and cartography
GoldenPath hg38 (UCSC)ITSN1  -     chr21:33642501-33899861 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ITSN1  -     21q22.11   [Description]    (hg19-Feb_2009)
GoldenPathITSN1 - 21q22.11 [CytoView hg19]  ITSN1 - 21q22.11 [CytoView hg38]
ImmunoBaseENSG00000205726
genome Data Viewer NCBIITSN1 [Mapview hg19]  
OMIM602442   
Gene and transcription
Genbank (Entrez)AF064243 AF064244 AF085873 AF114487 AF114488
RefSeq transcript (Entrez)NM_001001132 NM_001331008 NM_001331009 NM_001331010 NM_001331011 NM_001331012 NM_003024
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ITSN1
Alternative Splicing GalleryENSG00000205726
Gene ExpressionITSN1 [ NCBI-GEO ]   ITSN1 [ EBI - ARRAY_EXPRESS ]   ITSN1 [ SEEK ]   ITSN1 [ MEM ]
Gene Expression Viewer (FireBrowse)ITSN1 [ Firebrowse - Broad ]
GenevisibleExpression of ITSN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6453
GTEX Portal (Tissue expression)ITSN1
Human Protein AtlasENSG00000205726-ITSN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ITSN1
Blocks (Seattle)ITSN1
Human Protein Atlas [tissue]ENSG00000205726-ITSN1 [tissue]
HPRD03898
IPIIPI00304740   IPI00220592   IPI00220593   IPI00220594   IPI00451616   IPI00871929   IPI00878717   IPI00451615   IPI00903117   IPI01025838   IPI01010054   IPI00852754   IPI00852863   IPI00829634   IPI00852819   IPI00852670   IPI00878659   IPI00893945   IPI00816762   IPI00927290   
Protein Interaction databases
BioGRIDITSN1
STRING (EMBL)ITSN1
ZODIACITSN1
Ontologies - Pathways
Litterature
PubMed109 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXITSN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 25 19:27:15 CET 2021

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