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IVL (involucrin)

Identity

Other alias-
HGNC (Hugo) IVL
LocusID (NCBI) 3713
Atlas_Id 64702
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152908545 and ends at 152911886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCL9 (1q21.2) / IVL (1q21.3)RPS6 (9p22.1) / IVL (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IVL   6187
Cards
Entrez_Gene (NCBI)IVL  3713  involucrin
Aliases
GeneCards (Weizmann)IVL
Ensembl hg19 (Hinxton)ENSG00000163207 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163207 [Gene_View]  chr1:152908545-152911886 [Contig_View]  IVL [Vega]
ICGC DataPortalENSG00000163207
TCGA cBioPortalIVL
AceView (NCBI)IVL
Genatlas (Paris)IVL
WikiGenes3713
SOURCE (Princeton)IVL
Genetics Home Reference (NIH)IVL
Genomic and cartography
GoldenPath hg38 (UCSC)IVL  -     chr1:152908545-152911886 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IVL  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblIVL - 1q21.3 [CytoView hg19]  IVL - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIIVL [Mapview hg19]  IVL [Mapview hg38]
OMIM147360   
Gene and transcription
Genbank (Entrez)AK300492 AK301649 BC046391 BG679040 BM811601
RefSeq transcript (Entrez)NM_005547
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IVL
Cluster EST : UnigeneHs.516439 [ NCBI ]
CGAP (NCI)Hs.516439
Alternative Splicing GalleryENSG00000163207
Gene ExpressionIVL [ NCBI-GEO ]   IVL [ EBI - ARRAY_EXPRESS ]   IVL [ SEEK ]   IVL [ MEM ]
Gene Expression Viewer (FireBrowse)IVL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3713
GTEX Portal (Tissue expression)IVL
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07476   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07476  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07476
Splice isoforms : SwissVarP07476
PhosPhoSitePlusP07476
Domaine pattern : Prosite (Expaxy)INVOLUCRIN (PS00795)   
Domains : Interpro (EBI)Involucrin_CS    Involucrin_N    Involucrin_rpt   
Domain families : Pfam (Sanger)Involucrin (PF00904)    Involucrin_N (PF10583)   
Domain families : Pfam (NCBI)pfam00904    pfam10583   
Conserved Domain (NCBI)IVL
DMDM Disease mutations3713
Blocks (Seattle)IVL
PDB (SRS)1EU0   
PDB (PDBSum)1EU0   
PDB (IMB)1EU0   
PDB (RSDB)1EU0   
Structural Biology KnowledgeBase1EU0   
SCOP (Structural Classification of Proteins)1EU0   
CATH (Classification of proteins structures)1EU0   
SuperfamilyP07476
Human Protein AtlasENSG00000163207
Peptide AtlasP07476
HPRD00931
IPIIPI00011692   IPI01009809   
Protein Interaction databases
DIP (DOE-UCLA)P07476
IntAct (EBI)P07476
FunCoupENSG00000163207
BioGRIDIVL
STRING (EMBL)IVL
ZODIACIVL
Ontologies - Pathways
QuickGOP07476
Ontology : AmiGOcornified envelope  cornified envelope  structural molecule activity  protein binding  cytoplasm  centrosome  cytosol  cytosol  response to UV-B  nuclear body  peptide cross-linking  isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine  keratinocyte differentiation  protein binding, bridging  extracellular exosome  cornification  
Ontology : EGO-EBIcornified envelope  cornified envelope  structural molecule activity  protein binding  cytoplasm  centrosome  cytosol  cytosol  response to UV-B  nuclear body  peptide cross-linking  isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine  keratinocyte differentiation  protein binding, bridging  extracellular exosome  cornification  
NDEx NetworkIVL
Atlas of Cancer Signalling NetworkIVL
Wikipedia pathwaysIVL
Orthology - Evolution
OrthoDB3713
GeneTree (enSembl)ENSG00000163207
Phylogenetic Trees/Animal Genes : TreeFamIVL
HOVERGENP07476
HOGENOMP07476
Homologs : HomoloGeneIVL
Homology/Alignments : Family Browser (UCSC)IVL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIVL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IVL
dbVarIVL
ClinVarIVL
1000_GenomesIVL 
Exome Variant ServerIVL
ExAC (Exome Aggregation Consortium)IVL (select the gene name)
Genetic variants : HAPMAP3713
Genomic Variants (DGV)IVL [DGVbeta]
DECIPHERIVL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIVL 
Mutations
ICGC Data PortalIVL 
TCGA Data PortalIVL 
Broad Tumor PortalIVL
OASIS PortalIVL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIVL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIVL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IVL
DgiDB (Drug Gene Interaction Database)IVL
DoCM (Curated mutations)IVL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IVL (select a term)
intoGenIVL
Cancer3DIVL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147360   
Orphanet
MedgenIVL
Genetic Testing Registry IVL
NextProtP07476 [Medical]
TSGene3713
GENETestsIVL
Target ValidationIVL
Huge Navigator IVL [HugePedia]
snp3D : Map Gene to Disease3713
BioCentury BCIQIVL
ClinGenIVL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3713
Chemical/Pharm GKB GenePA29985
Clinical trialIVL
Miscellaneous
canSAR (ICR)IVL (select the gene name)
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIVL
EVEXIVL
GoPubMedIVL
iHOPIVL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:48 CEST 2017

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