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IVNS1ABP (influenza virus NS1A binding protein)

Identity

Alias_symbol (synonym)NS1-BP
HSPC068
NS-1
KIAA0850
ND1
KLHL39
Other aliasFLARA3
NS1BP
HGNC (Hugo) IVNS1ABP
LocusID (NCBI) 10625
Atlas_Id 55603
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 185265522 and ends at 185286461 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACBD6 (1q25.2) / IVNS1ABP (1q25.3)ATP6V1H (8q11.23) / IVNS1ABP (1q25.3)CEP55 (10q23.33) / IVNS1ABP (1q25.3)
COL11A1 (1p21.1) / IVNS1ABP (1q25.3)DNAJB11 (3q27.3) / IVNS1ABP (1q25.3)FUBP1 (1p31.1) / IVNS1ABP (1q25.3)
ING3 (7q31.31) / IVNS1ABP (1q25.3)IVNS1ABP (1q25.3) / GRSF1 (4q13.3)IVNS1ABP (1q25.3) / IVNS1ABP (1q25.3)
IVNS1ABP (1q25.3) / SF3B2 (11q13.1)IVNS1ABP (1q25.3) / ZC3H13 (13q14.13)RECQL5 (17q25.1) / IVNS1ABP (1q25.3)
SKIV2L2 (5q11.2) / IVNS1ABP (1q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IVNS1ABP   16951
Cards
Entrez_Gene (NCBI)IVNS1ABP  10625  influenza virus NS1A binding protein
AliasesFLARA3; HSPC068; KLHL39; ND1; 
NS-1; NS1-BP; NS1BP
GeneCards (Weizmann)IVNS1ABP
Ensembl hg19 (Hinxton)ENSG00000116679 [Gene_View]  chr1:185265522-185286461 [Contig_View]  IVNS1ABP [Vega]
Ensembl hg38 (Hinxton)ENSG00000116679 [Gene_View]  chr1:185265522-185286461 [Contig_View]  IVNS1ABP [Vega]
ICGC DataPortalENSG00000116679
TCGA cBioPortalIVNS1ABP
AceView (NCBI)IVNS1ABP
Genatlas (Paris)IVNS1ABP
WikiGenes10625
SOURCE (Princeton)IVNS1ABP
Genetics Home Reference (NIH)IVNS1ABP
Genomic and cartography
GoldenPath hg19 (UCSC)IVNS1ABP  -     chr1:185265522-185286461 -  1q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IVNS1ABP  -     1q25.3   [Description]    (hg38-Dec_2013)
EnsemblIVNS1ABP - 1q25.3 [CytoView hg19]  IVNS1ABP - 1q25.3 [CytoView hg38]
Mapping of homologs : NCBIIVNS1ABP [Mapview hg19]  IVNS1ABP [Mapview hg38]
OMIM609209   
Gene and transcription
Genbank (Entrez)AB020657 AF161553 AF205218 AJ012449 AK000931
RefSeq transcript (Entrez)NM_006469 NM_016389
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)IVNS1ABP
Cluster EST : UnigeneHs.497183 [ NCBI ]
CGAP (NCI)Hs.497183
Alternative Splicing GalleryENSG00000116679
Gene ExpressionIVNS1ABP [ NCBI-GEO ]   IVNS1ABP [ EBI - ARRAY_EXPRESS ]   IVNS1ABP [ SEEK ]   IVNS1ABP [ MEM ]
Gene Expression Viewer (FireBrowse)IVNS1ABP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10625
GTEX Portal (Tissue expression)IVNS1ABP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6Y0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6Y0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6Y0
Splice isoforms : SwissVarQ9Y6Y0
PhosPhoSitePlusQ9Y6Y0
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB-kelch_protein    BTB/POZ_dom    Gal_Oxidase_b-propeller    Kelch_1    NS1BP    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam01344   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  Kelch (SM00612)  
Conserved Domain (NCBI)IVNS1ABP
DMDM Disease mutations10625
Blocks (Seattle)IVNS1ABP
SuperfamilyQ9Y6Y0
Human Protein AtlasENSG00000116679
Peptide AtlasQ9Y6Y0
HPRD10004
IPIIPI00014319   IPI00871928   IPI00844107   IPI00514639   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6Y0
IntAct (EBI)Q9Y6Y0
FunCoupENSG00000116679
BioGRIDIVNS1ABP
STRING (EMBL)IVNS1ABP
ZODIACIVNS1ABP
Ontologies - Pathways
QuickGOQ9Y6Y0
Ontology : AmiGOnucleoplasm  transcription factor complex  spliceosomal complex  cytoplasm  transcription from RNA polymerase III promoter  RNA splicing  response to virus  actin cytoskeleton  viral process  negative regulation of intrinsic apoptotic signaling pathway  
Ontology : EGO-EBInucleoplasm  transcription factor complex  spliceosomal complex  cytoplasm  transcription from RNA polymerase III promoter  RNA splicing  response to virus  actin cytoskeleton  viral process  negative regulation of intrinsic apoptotic signaling pathway  
Pathways : KEGGInfluenza A   
NDEx NetworkIVNS1ABP
Atlas of Cancer Signalling NetworkIVNS1ABP
Wikipedia pathwaysIVNS1ABP
Orthology - Evolution
OrthoDB10625
GeneTree (enSembl)ENSG00000116679
Phylogenetic Trees/Animal Genes : TreeFamIVNS1ABP
HOVERGENQ9Y6Y0
HOGENOMQ9Y6Y0
Homologs : HomoloGeneIVNS1ABP
Homology/Alignments : Family Browser (UCSC)IVNS1ABP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIVNS1ABP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IVNS1ABP
dbVarIVNS1ABP
ClinVarIVNS1ABP
1000_GenomesIVNS1ABP 
Exome Variant ServerIVNS1ABP
ExAC (Exome Aggregation Consortium)IVNS1ABP (select the gene name)
Genetic variants : HAPMAP10625
Genomic Variants (DGV)IVNS1ABP [DGVbeta]
DECIPHER (Syndromes)1:185265522-185286461  ENSG00000116679
CONAN: Copy Number AnalysisIVNS1ABP 
Mutations
ICGC Data PortalIVNS1ABP 
TCGA Data PortalIVNS1ABP 
Broad Tumor PortalIVNS1ABP
OASIS PortalIVNS1ABP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIVNS1ABP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIVNS1ABP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IVNS1ABP
DgiDB (Drug Gene Interaction Database)IVNS1ABP
DoCM (Curated mutations)IVNS1ABP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IVNS1ABP (select a term)
intoGenIVNS1ABP
Cancer3DIVNS1ABP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609209   
Orphanet
MedgenIVNS1ABP
Genetic Testing Registry IVNS1ABP
NextProtQ9Y6Y0 [Medical]
TSGene10625
GENETestsIVNS1ABP
Huge Navigator IVNS1ABP [HugePedia]
snp3D : Map Gene to Disease10625
BioCentury BCIQIVNS1ABP
ClinGenIVNS1ABP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10625
Chemical/Pharm GKB GenePA134875300
Clinical trialIVNS1ABP
Miscellaneous
canSAR (ICR)IVNS1ABP (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIVNS1ABP
EVEXIVNS1ABP
GoPubMedIVNS1ABP
iHOPIVNS1ABP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:05:40 CEST 2017

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