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IZUMO2 (IZUMO family member 2)

Identity

Alias_namesC19orf41
chromosome 19 open reading frame 41
Alias_symbol (synonym)MGC33947
SCRL
Other aliasPLAL6978
PRO21961
HGNC (Hugo) IZUMO2
LocusID (NCBI) 126123
Atlas_Id 64706
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50152548 and ends at 50163281 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF569 (19q13.12) / IZUMO2 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IZUMO2   28518
Cards
Entrez_Gene (NCBI)IZUMO2  126123  IZUMO family member 2
AliasesC19orf41; PLAL6978; PRO21961; SCRL
GeneCards (Weizmann)IZUMO2
Ensembl hg19 (Hinxton)ENSG00000161652 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161652 [Gene_View]  chr19:50152548-50163281 [Contig_View]  IZUMO2 [Vega]
ICGC DataPortalENSG00000161652
TCGA cBioPortalIZUMO2
AceView (NCBI)IZUMO2
Genatlas (Paris)IZUMO2
WikiGenes126123
SOURCE (Princeton)IZUMO2
Genetics Home Reference (NIH)IZUMO2
Genomic and cartography
GoldenPath hg38 (UCSC)IZUMO2  -     chr19:50152548-50163281 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IZUMO2  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblIZUMO2 - 19q13.33 [CytoView hg19]  IZUMO2 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIIZUMO2 [Mapview hg19]  IZUMO2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131024 AK307321 AY358196 BC029535 DB523757
RefSeq transcript (Entrez)NM_001321449 NM_152358
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IZUMO2
Cluster EST : UnigeneHs.414175 [ NCBI ]
CGAP (NCI)Hs.414175
Alternative Splicing GalleryENSG00000161652
Gene ExpressionIZUMO2 [ NCBI-GEO ]   IZUMO2 [ EBI - ARRAY_EXPRESS ]   IZUMO2 [ SEEK ]   IZUMO2 [ MEM ]
Gene Expression Viewer (FireBrowse)IZUMO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126123
GTEX Portal (Tissue expression)IZUMO2
Human Protein AtlasENSG00000161652-IZUMO2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXV1
Splice isoforms : SwissVarQ6UXV1
PhosPhoSitePlusQ6UXV1
Domains : Interpro (EBI)IZUMO   
Domain families : Pfam (Sanger)IZUMO (PF15005)   
Domain families : Pfam (NCBI)pfam15005   
Conserved Domain (NCBI)IZUMO2
DMDM Disease mutations126123
Blocks (Seattle)IZUMO2
SuperfamilyQ6UXV1
Human Protein Atlas [tissue]ENSG00000161652-IZUMO2 [tissue]
Peptide AtlasQ6UXV1
HPRD14578
IPIIPI00952779   IPI00169305   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXV1
IntAct (EBI)Q6UXV1
FunCoupENSG00000161652
BioGRIDIZUMO2
STRING (EMBL)IZUMO2
ZODIACIZUMO2
Ontologies - Pathways
QuickGOQ6UXV1
Ontology : AmiGOnucleus  integral component of membrane  
Ontology : EGO-EBInucleus  integral component of membrane  
NDEx NetworkIZUMO2
Atlas of Cancer Signalling NetworkIZUMO2
Wikipedia pathwaysIZUMO2
Orthology - Evolution
OrthoDB126123
GeneTree (enSembl)ENSG00000161652
Phylogenetic Trees/Animal Genes : TreeFamIZUMO2
HOVERGENQ6UXV1
HOGENOMQ6UXV1
Homologs : HomoloGeneIZUMO2
Homology/Alignments : Family Browser (UCSC)IZUMO2
Gene fusions - Rearrangements
Tumor Fusion PortalIZUMO2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIZUMO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IZUMO2
dbVarIZUMO2
ClinVarIZUMO2
1000_GenomesIZUMO2 
Exome Variant ServerIZUMO2
ExAC (Exome Aggregation Consortium)ENSG00000161652
GNOMAD BrowserENSG00000161652
Genetic variants : HAPMAP126123
Genomic Variants (DGV)IZUMO2 [DGVbeta]
DECIPHERIZUMO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIZUMO2 
Mutations
ICGC Data PortalIZUMO2 
TCGA Data PortalIZUMO2 
Broad Tumor PortalIZUMO2
OASIS PortalIZUMO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIZUMO2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIZUMO2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IZUMO2
DgiDB (Drug Gene Interaction Database)IZUMO2
DoCM (Curated mutations)IZUMO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IZUMO2 (select a term)
intoGenIZUMO2
Cancer3DIZUMO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIZUMO2
MedgenIZUMO2
Genetic Testing Registry IZUMO2
NextProtQ6UXV1 [Medical]
TSGene126123
GENETestsIZUMO2
Target ValidationIZUMO2
Huge Navigator IZUMO2 [HugePedia]
snp3D : Map Gene to Disease126123
BioCentury BCIQIZUMO2
ClinGenIZUMO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126123
Chemical/Pharm GKB GenePA165393535
Clinical trialIZUMO2
Miscellaneous
canSAR (ICR)IZUMO2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIZUMO2
EVEXIZUMO2
GoPubMedIZUMO2
iHOPIZUMO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:34:21 CET 2017

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