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IZUMO3 (IZUMO family member 3)

Identity

Alias_namesC9orf134
chromosome 9 open reading frame 134
Alias_symbol (synonym)bA20A20.1
Other alias
HGNC (Hugo) IZUMO3
LocusID (NCBI) 100129669
Atlas_Id 64707
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 24543215 and ends at 24545676 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MLLT3 (9p21.3) / IZUMO3 (9p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IZUMO3   31421
Cards
Entrez_Gene (NCBI)IZUMO3  100129669  IZUMO family member 3
AliasesC9orf134; bA20A20.1
GeneCards (Weizmann)IZUMO3
Ensembl hg19 (Hinxton)ENSG00000205442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205442 [Gene_View]  chr9:24543215-24545676 [Contig_View]  IZUMO3 [Vega]
ICGC DataPortalENSG00000205442
TCGA cBioPortalIZUMO3
AceView (NCBI)IZUMO3
Genatlas (Paris)IZUMO3
WikiGenes100129669
SOURCE (Princeton)IZUMO3
Genetics Home Reference (NIH)IZUMO3
Genomic and cartography
GoldenPath hg38 (UCSC)IZUMO3  -     chr9:24543215-24545676 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IZUMO3  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblIZUMO3 - 9p21.3 [CytoView hg19]  IZUMO3 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIIZUMO3 [Mapview hg19]  IZUMO3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)HY054657 HY236269
RefSeq transcript (Entrez)NM_001271706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IZUMO3
Cluster EST : UnigeneHs.573530 [ NCBI ]
CGAP (NCI)Hs.573530
Alternative Splicing GalleryENSG00000205442
Gene ExpressionIZUMO3 [ NCBI-GEO ]   IZUMO3 [ EBI - ARRAY_EXPRESS ]   IZUMO3 [ SEEK ]   IZUMO3 [ MEM ]
Gene Expression Viewer (FireBrowse)IZUMO3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129669
GTEX Portal (Tissue expression)IZUMO3
Human Protein AtlasENSG00000205442-IZUMO3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZ72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZ72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZ72
Splice isoforms : SwissVarQ5VZ72
PhosPhoSitePlusQ5VZ72
Domains : Interpro (EBI)IZUMO   
Domain families : Pfam (Sanger)IZUMO (PF15005)   
Domain families : Pfam (NCBI)pfam15005   
Conserved Domain (NCBI)IZUMO3
DMDM Disease mutations100129669
Blocks (Seattle)IZUMO3
SuperfamilyQ5VZ72
Human Protein Atlas [tissue]ENSG00000205442-IZUMO3 [tissue]
Peptide AtlasQ5VZ72
Protein Interaction databases
DIP (DOE-UCLA)Q5VZ72
IntAct (EBI)Q5VZ72
FunCoupENSG00000205442
BioGRIDIZUMO3
STRING (EMBL)IZUMO3
ZODIACIZUMO3
Ontologies - Pathways
QuickGOQ5VZ72
Ontology : AmiGOplasma membrane  integral component of membrane  protein homodimerization activity  
Ontology : EGO-EBIplasma membrane  integral component of membrane  protein homodimerization activity  
NDEx NetworkIZUMO3
Atlas of Cancer Signalling NetworkIZUMO3
Wikipedia pathwaysIZUMO3
Orthology - Evolution
OrthoDB100129669
GeneTree (enSembl)ENSG00000205442
Phylogenetic Trees/Animal Genes : TreeFamIZUMO3
HOVERGENQ5VZ72
HOGENOMQ5VZ72
Homologs : HomoloGeneIZUMO3
Homology/Alignments : Family Browser (UCSC)IZUMO3
Gene fusions - Rearrangements
Fusion: Tumor Portal IZUMO3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIZUMO3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IZUMO3
dbVarIZUMO3
ClinVarIZUMO3
1000_GenomesIZUMO3 
Exome Variant ServerIZUMO3
ExAC (Exome Aggregation Consortium)ENSG00000205442
GNOMAD BrowserENSG00000205442
Genetic variants : HAPMAP100129669
Genomic Variants (DGV)IZUMO3 [DGVbeta]
DECIPHERIZUMO3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIZUMO3 
Mutations
ICGC Data PortalIZUMO3 
TCGA Data PortalIZUMO3 
Broad Tumor PortalIZUMO3
OASIS PortalIZUMO3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIZUMO3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIZUMO3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IZUMO3
DgiDB (Drug Gene Interaction Database)IZUMO3
DoCM (Curated mutations)IZUMO3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IZUMO3 (select a term)
intoGenIZUMO3
Cancer3DIZUMO3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIZUMO3
Genetic Testing Registry IZUMO3
NextProtQ5VZ72 [Medical]
TSGene100129669
GENETestsIZUMO3
Target ValidationIZUMO3
Huge Navigator IZUMO3 [HugePedia]
snp3D : Map Gene to Disease100129669
BioCentury BCIQIZUMO3
ClinGenIZUMO3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129669
Chemical/Pharm GKB GenePA165585816
Clinical trialIZUMO3
Miscellaneous
canSAR (ICR)IZUMO3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIZUMO3
EVEXIZUMO3
GoPubMedIZUMO3
iHOPIZUMO3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 11:51:51 CET 2017

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