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JADE2 (jade family PHD finger 2)

Identity

Alias_namesPHF15
PHD finger protein 15
Alias_symbol (synonym)KIAA0239
JADE-2
Other alias
HGNC (Hugo) JADE2
LocusID (NCBI) 23338
Atlas_Id 54388
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 134525650 and ends at 134583230 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
JADE2 (5q31.1) / AKR1B1 (7q33)JADE2 (5q31.1) / PLOD3 (7q22.1)JADE2 (5q31.1) / SEC31A (4q21.22)
JADE2 (5q31.1) / UBE2B (5q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)JADE2   22984
Cards
Entrez_Gene (NCBI)JADE2  23338  jade family PHD finger 2
AliasesJADE-2; PHF15
GeneCards (Weizmann)JADE2
Ensembl hg19 (Hinxton)ENSG00000043143 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000043143 [Gene_View]  chr5:134525650-134583230 [Contig_View]  JADE2 [Vega]
ICGC DataPortalENSG00000043143
TCGA cBioPortalJADE2
AceView (NCBI)JADE2
Genatlas (Paris)JADE2
WikiGenes23338
SOURCE (Princeton)JADE2
Genetics Home Reference (NIH)JADE2
Genomic and cartography
GoldenPath hg38 (UCSC)JADE2  -     chr5:134525650-134583230 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JADE2  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblJADE2 - 5q31.1 [CytoView hg19]  JADE2 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIJADE2 [Mapview hg19]  JADE2 [Mapview hg38]
OMIM610515   
Gene and transcription
Genbank (Entrez)AA781608 AJ251833 AK025001 AK056471 AK074123
RefSeq transcript (Entrez)NM_001289984 NM_001289985 NM_001308143 NM_015288
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JADE2
Cluster EST : UnigeneHs.732155 [ NCBI ]
CGAP (NCI)Hs.732155
Alternative Splicing GalleryENSG00000043143
Gene ExpressionJADE2 [ NCBI-GEO ]   JADE2 [ EBI - ARRAY_EXPRESS ]   JADE2 [ SEEK ]   JADE2 [ MEM ]
Gene Expression Viewer (FireBrowse)JADE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23338
GTEX Portal (Tissue expression)JADE2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQC1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQC1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQC1
Splice isoforms : SwissVarQ9NQC1
PhosPhoSitePlusQ9NQC1
Domaine pattern : Prosite (Expaxy)EPHD (PS51805)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Enhancer_polycomb-like_N    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)EPL1 (PF10513)   
Domain families : Pfam (NCBI)pfam10513   
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)JADE2
DMDM Disease mutations23338
Blocks (Seattle)JADE2
SuperfamilyQ9NQC1
Human Protein AtlasENSG00000043143
Peptide AtlasQ9NQC1
HPRD15124
IPIIPI00792658   IPI00884143   IPI00644322   IPI00878910   IPI00382788   IPI00879500   IPI00879315   IPI01011231   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQC1
IntAct (EBI)Q9NQC1
FunCoupENSG00000043143
BioGRIDJADE2
STRING (EMBL)JADE2
ZODIACJADE2
Ontologies - Pathways
QuickGOQ9NQC1
Ontology : AmiGOhistone acetyltransferase complex  protein binding  nucleoplasm  zinc ion binding  histone H3 acetylation  histone H4-K5 acetylation  histone H4-K8 acetylation  histone H4-K12 acetylation  histone H4-K16 acetylation  extracellular exosome  
Ontology : EGO-EBIhistone acetyltransferase complex  protein binding  nucleoplasm  zinc ion binding  histone H3 acetylation  histone H4-K5 acetylation  histone H4-K8 acetylation  histone H4-K12 acetylation  histone H4-K16 acetylation  extracellular exosome  
NDEx NetworkJADE2
Atlas of Cancer Signalling NetworkJADE2
Wikipedia pathwaysJADE2
Orthology - Evolution
OrthoDB23338
GeneTree (enSembl)ENSG00000043143
Phylogenetic Trees/Animal Genes : TreeFamJADE2
HOVERGENQ9NQC1
HOGENOMQ9NQC1
Homologs : HomoloGeneJADE2
Homology/Alignments : Family Browser (UCSC)JADE2
Gene fusions - Rearrangements
Fusion : MitelmanJADE2/UBE2B [5q31.1/5q31.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJADE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JADE2
dbVarJADE2
ClinVarJADE2
1000_GenomesJADE2 
Exome Variant ServerJADE2
ExAC (Exome Aggregation Consortium)JADE2 (select the gene name)
Genetic variants : HAPMAP23338
Genomic Variants (DGV)JADE2 [DGVbeta]
DECIPHERJADE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJADE2 
Mutations
ICGC Data PortalJADE2 
TCGA Data PortalJADE2 
Broad Tumor PortalJADE2
OASIS PortalJADE2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDJADE2
BioMutasearch JADE2
DgiDB (Drug Gene Interaction Database)JADE2
DoCM (Curated mutations)JADE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JADE2 (select a term)
intoGenJADE2
Cancer3DJADE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610515   
Orphanet
MedgenJADE2
Genetic Testing Registry JADE2
NextProtQ9NQC1 [Medical]
TSGene23338
GENETestsJADE2
Target ValidationJADE2
Huge Navigator JADE2 [HugePedia]
snp3D : Map Gene to Disease23338
BioCentury BCIQJADE2
ClinGenJADE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23338
Chemical/Pharm GKB GenePA128394627
Clinical trialJADE2
Miscellaneous
canSAR (ICR)JADE2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJADE2
EVEXJADE2
GoPubMedJADE2
iHOPJADE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:39:03 CEST 2017

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