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JADE3 (jade family PHD finger 3)

Identity

Alias_namesPHF16
PHD finger protein 16
Alias_symbol (synonym)KIAA0215
JADE-3
Other alias
HGNC (Hugo) JADE3
LocusID (NCBI) 9767
Atlas_Id 64709
Location Xp11.3  [Link to chromosome band Xp11]
Location_base_pair Starts at 46912276 and ends at 47061242 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
JADE3 (Xp11.23) / CNN1 (19p13.2)JADE3 (Xp11.23) / LINC01545 (Xp11.23)LAPTM5 (1p35.2) / JADE3 (Xp11.23)
RBM10 (Xp11.23) / JADE3 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JADE3   22982
Cards
Entrez_Gene (NCBI)JADE3  9767  jade family PHD finger 3
AliasesJADE-3; PHF16
GeneCards (Weizmann)JADE3
Ensembl hg19 (Hinxton)ENSG00000102221 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102221 [Gene_View]  chrX:46912276-47061242 [Contig_View]  JADE3 [Vega]
ICGC DataPortalENSG00000102221
TCGA cBioPortalJADE3
AceView (NCBI)JADE3
Genatlas (Paris)JADE3
WikiGenes9767
SOURCE (Princeton)JADE3
Genetics Home Reference (NIH)JADE3
Genomic and cartography
GoldenPath hg38 (UCSC)JADE3  -     chrX:46912276-47061242 +  Xp11.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JADE3  -     Xp11.3   [Description]    (hg19-Feb_2009)
EnsemblJADE3 - Xp11.3 [CytoView hg19]  JADE3 - Xp11.3 [CytoView hg38]
Mapping of homologs : NCBIJADE3 [Mapview hg19]  JADE3 [Mapview hg38]
OMIM300618   
Gene and transcription
Genbank (Entrez)AF127774 AK291220 AL704455 AW071647 BC113880
RefSeq transcript (Entrez)NM_001077445 NM_014735
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JADE3
Cluster EST : UnigeneHs.371977 [ NCBI ]
CGAP (NCI)Hs.371977
Alternative Splicing GalleryENSG00000102221
Gene ExpressionJADE3 [ NCBI-GEO ]   JADE3 [ EBI - ARRAY_EXPRESS ]   JADE3 [ SEEK ]   JADE3 [ MEM ]
Gene Expression Viewer (FireBrowse)JADE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9767
GTEX Portal (Tissue expression)JADE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92613   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92613  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92613
Splice isoforms : SwissVarQ92613
PhosPhoSitePlusQ92613
Domaine pattern : Prosite (Expaxy)EPHD (PS51805)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Enhancer_polycomb-like_N    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)EPL1 (PF10513)   
Domain families : Pfam (NCBI)pfam10513   
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)JADE3
DMDM Disease mutations9767
Blocks (Seattle)JADE3
SuperfamilyQ92613
Human Protein AtlasENSG00000102221
Peptide AtlasQ92613
HPRD06675
IPIIPI00006077   IPI00878543   IPI00878265   
Protein Interaction databases
DIP (DOE-UCLA)Q92613
IntAct (EBI)Q92613
FunCoupENSG00000102221
BioGRIDJADE3
STRING (EMBL)JADE3
ZODIACJADE3
Ontologies - Pathways
QuickGOQ92613
Ontology : AmiGOhistone acetyltransferase complex  protein binding  zinc ion binding  histone H3 acetylation  histone H4-K5 acetylation  histone H4-K8 acetylation  histone H4-K12 acetylation  histone H4-K16 acetylation  
Ontology : EGO-EBIhistone acetyltransferase complex  protein binding  zinc ion binding  histone H3 acetylation  histone H4-K5 acetylation  histone H4-K8 acetylation  histone H4-K12 acetylation  histone H4-K16 acetylation  
NDEx NetworkJADE3
Atlas of Cancer Signalling NetworkJADE3
Wikipedia pathwaysJADE3
Orthology - Evolution
OrthoDB9767
GeneTree (enSembl)ENSG00000102221
Phylogenetic Trees/Animal Genes : TreeFamJADE3
HOVERGENQ92613
HOGENOMQ92613
Homologs : HomoloGeneJADE3
Homology/Alignments : Family Browser (UCSC)JADE3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJADE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JADE3
dbVarJADE3
ClinVarJADE3
1000_GenomesJADE3 
Exome Variant ServerJADE3
ExAC (Exome Aggregation Consortium)JADE3 (select the gene name)
Genetic variants : HAPMAP9767
Genomic Variants (DGV)JADE3 [DGVbeta]
DECIPHERJADE3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJADE3 
Mutations
ICGC Data PortalJADE3 
TCGA Data PortalJADE3 
Broad Tumor PortalJADE3
OASIS PortalJADE3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDJADE3
BioMutasearch JADE3
DgiDB (Drug Gene Interaction Database)JADE3
DoCM (Curated mutations)JADE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JADE3 (select a term)
intoGenJADE3
Cancer3DJADE3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300618   
Orphanet
MedgenJADE3
Genetic Testing Registry JADE3
NextProtQ92613 [Medical]
TSGene9767
GENETestsJADE3
Target ValidationJADE3
Huge Navigator JADE3 [HugePedia]
snp3D : Map Gene to Disease9767
BioCentury BCIQJADE3
ClinGenJADE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9767
Chemical/Pharm GKB GenePA134993233
Clinical trialJADE3
Miscellaneous
canSAR (ICR)JADE3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJADE3
EVEXJADE3
GoPubMedJADE3
iHOPJADE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:49 CEST 2017

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