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JAGN1 (jagunal homolog 1 (Drosophila))

Identity

Alias_namesjagunal homolog 1 (Drosophila)
Alias_symbol (synonym)GL009
FLJ14602
Other aliasSCN6
HGNC (Hugo) JAGN1
LocusID (NCBI) 84522
Atlas_Id 64711
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9932271 and ends at 9936031 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JAGN1   26926
Cards
Entrez_Gene (NCBI)JAGN1  84522  jagunal homolog 1 (Drosophila)
AliasesGL009; SCN6
GeneCards (Weizmann)JAGN1
Ensembl hg19 (Hinxton)ENSG00000171135 [Gene_View]  chr3:9932271-9936031 [Contig_View]  JAGN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171135 [Gene_View]  chr3:9932271-9936031 [Contig_View]  JAGN1 [Vega]
ICGC DataPortalENSG00000171135
TCGA cBioPortalJAGN1
AceView (NCBI)JAGN1
Genatlas (Paris)JAGN1
WikiGenes84522
SOURCE (Princeton)JAGN1
Genetics Home Reference (NIH)JAGN1
Genomic and cartography
GoldenPath hg19 (UCSC)JAGN1  -     chr3:9932271-9936031 +  3p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)JAGN1  -     3p25.3   [Description]    (hg38-Dec_2013)
EnsemblJAGN1 - 3p25.3 [CytoView hg19]  JAGN1 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBIJAGN1 [Mapview hg19]  JAGN1 [Mapview hg38]
OMIM616012   616022   
Gene and transcription
Genbank (Entrez)AF212230 AK027508 AK074760 AK225756 BC008507
RefSeq transcript (Entrez)NM_032492
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_041779 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)JAGN1
Cluster EST : UnigeneHs.24054 [ NCBI ]
CGAP (NCI)Hs.24054
Alternative Splicing GalleryENSG00000171135
Gene ExpressionJAGN1 [ NCBI-GEO ]   JAGN1 [ EBI - ARRAY_EXPRESS ]   JAGN1 [ SEEK ]   JAGN1 [ MEM ]
Gene Expression Viewer (FireBrowse)JAGN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84522
GTEX Portal (Tissue expression)JAGN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5M9
Splice isoforms : SwissVarQ8N5M9
PhosPhoSitePlusQ8N5M9
Domains : Interpro (EBI)Jagunal   
Domain families : Pfam (Sanger)DUF1352 (PF07086)   
Domain families : Pfam (NCBI)pfam07086   
Conserved Domain (NCBI)JAGN1
DMDM Disease mutations84522
Blocks (Seattle)JAGN1
SuperfamilyQ8N5M9
Human Protein AtlasENSG00000171135
Peptide AtlasQ8N5M9
HPRD13749
IPIIPI00329025   IPI00387005   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5M9
IntAct (EBI)Q8N5M9
FunCoupENSG00000171135
BioGRIDJAGN1
STRING (EMBL)JAGN1
ZODIACJAGN1
Ontologies - Pathways
QuickGOQ8N5M9
Ontology : AmiGOneutrophil mediated immunity  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  exocytosis  endoplasmic reticulum organization  protein transport  integral component of membrane  vesicle-mediated transport  neutrophil differentiation  granulocyte colony-stimulating factor signaling pathway  defense response to fungus  neutrophil migration  
Ontology : EGO-EBIneutrophil mediated immunity  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  exocytosis  endoplasmic reticulum organization  protein transport  integral component of membrane  vesicle-mediated transport  neutrophil differentiation  granulocyte colony-stimulating factor signaling pathway  defense response to fungus  neutrophil migration  
NDEx NetworkJAGN1
Atlas of Cancer Signalling NetworkJAGN1
Wikipedia pathwaysJAGN1
Orthology - Evolution
OrthoDB84522
GeneTree (enSembl)ENSG00000171135
Phylogenetic Trees/Animal Genes : TreeFamJAGN1
HOVERGENQ8N5M9
HOGENOMQ8N5M9
Homologs : HomoloGeneJAGN1
Homology/Alignments : Family Browser (UCSC)JAGN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJAGN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JAGN1
dbVarJAGN1
ClinVarJAGN1
1000_GenomesJAGN1 
Exome Variant ServerJAGN1
ExAC (Exome Aggregation Consortium)JAGN1 (select the gene name)
Genetic variants : HAPMAP84522
Genomic Variants (DGV)JAGN1 [DGVbeta]
DECIPHER (Syndromes)3:9932271-9936031  ENSG00000171135
CONAN: Copy Number AnalysisJAGN1 
Mutations
ICGC Data PortalJAGN1 
TCGA Data PortalJAGN1 
Broad Tumor PortalJAGN1
OASIS PortalJAGN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJAGN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJAGN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JAGN1
DgiDB (Drug Gene Interaction Database)JAGN1
DoCM (Curated mutations)JAGN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JAGN1 (select a term)
intoGenJAGN1
Cancer3DJAGN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616012    616022   
Orphanet23154   
MedgenJAGN1
Genetic Testing Registry JAGN1
NextProtQ8N5M9 [Medical]
TSGene84522
GENETestsJAGN1
Huge Navigator JAGN1 [HugePedia]
snp3D : Map Gene to Disease84522
BioCentury BCIQJAGN1
ClinGenJAGN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84522
Chemical/Pharm GKB GenePA134954931
Clinical trialJAGN1
Miscellaneous
canSAR (ICR)JAGN1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJAGN1
EVEXJAGN1
GoPubMedJAGN1
iHOPJAGN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:09:10 CET 2017

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