Atlas of Genetics and Cytogenetics in Oncology and Haematology


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JAKMIP1 (janus kinase and microtubule interacting protein 1)

Identity

Alias_symbol (synonym)MARLIN1
JAMIP1
Gababrbp
FLJ31564
Other alias
HGNC (Hugo) JAKMIP1
LocusID (NCBI) 152789
Atlas_Id 64712
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 6026199 and ends at 6200591 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LUC7L2 (7q34) / JAKMIP1 (4p16.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JAKMIP1   26460
Cards
Entrez_Gene (NCBI)JAKMIP1  152789  janus kinase and microtubule interacting protein 1
AliasesGababrbp; JAMIP1; MARLIN1
GeneCards (Weizmann)JAKMIP1
Ensembl hg19 (Hinxton)ENSG00000152969 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152969 [Gene_View]  chr4:6026199-6200591 [Contig_View]  JAKMIP1 [Vega]
ICGC DataPortalENSG00000152969
TCGA cBioPortalJAKMIP1
AceView (NCBI)JAKMIP1
Genatlas (Paris)JAKMIP1
WikiGenes152789
SOURCE (Princeton)JAKMIP1
Genetics Home Reference (NIH)JAKMIP1
Genomic and cartography
GoldenPath hg38 (UCSC)JAKMIP1  -     chr4:6026199-6200591 -  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JAKMIP1  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblJAKMIP1 - 4p16.1 [CytoView hg19]  JAKMIP1 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIJAKMIP1 [Mapview hg19]  JAKMIP1 [Mapview hg38]
OMIM611195   
Gene and transcription
Genbank (Entrez)AK056126 AK098536 AK124718 AK294356 AK295339
RefSeq transcript (Entrez)NM_001099433 NM_001306133 NM_001306134 NM_144720
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JAKMIP1
Cluster EST : UnigeneHs.479066 [ NCBI ]
CGAP (NCI)Hs.479066
Alternative Splicing GalleryENSG00000152969
Gene ExpressionJAKMIP1 [ NCBI-GEO ]   JAKMIP1 [ EBI - ARRAY_EXPRESS ]   JAKMIP1 [ SEEK ]   JAKMIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)JAKMIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152789
GTEX Portal (Tissue expression)JAKMIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N16
Splice isoforms : SwissVarQ96N16
PhosPhoSitePlusQ96N16
Domains : Interpro (EBI)JAKMIP    JAKMIP_C   
Domain families : Pfam (Sanger)JAKMIP_CC3 (PF16034)   
Domain families : Pfam (NCBI)pfam16034   
Conserved Domain (NCBI)JAKMIP1
DMDM Disease mutations152789
Blocks (Seattle)JAKMIP1
SuperfamilyQ96N16
Human Protein AtlasENSG00000152969
Peptide AtlasQ96N16
HPRD11292
IPIIPI00410321   IPI00853270   IPI00854585   IPI00854781   IPI00887997   IPI00888736   IPI00910717   IPI01025415   IPI00908695   IPI00964961   
Protein Interaction databases
DIP (DOE-UCLA)Q96N16
IntAct (EBI)Q96N16
FunCoupENSG00000152969
BioGRIDJAKMIP1
STRING (EMBL)JAKMIP1
ZODIACJAKMIP1
Ontologies - Pathways
QuickGOQ96N16
Ontology : AmiGORNA binding  protein binding  cytoplasm  microtubule  microtubule binding  protein transport  kinesin binding  extrinsic component of membrane  kinase binding  intracellular ribonucleoprotein complex  GABA receptor binding  cognition  
Ontology : EGO-EBIRNA binding  protein binding  cytoplasm  microtubule  microtubule binding  protein transport  kinesin binding  extrinsic component of membrane  kinase binding  intracellular ribonucleoprotein complex  GABA receptor binding  cognition  
NDEx NetworkJAKMIP1
Atlas of Cancer Signalling NetworkJAKMIP1
Wikipedia pathwaysJAKMIP1
Orthology - Evolution
OrthoDB152789
GeneTree (enSembl)ENSG00000152969
Phylogenetic Trees/Animal Genes : TreeFamJAKMIP1
HOVERGENQ96N16
HOGENOMQ96N16
Homologs : HomoloGeneJAKMIP1
Homology/Alignments : Family Browser (UCSC)JAKMIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJAKMIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JAKMIP1
dbVarJAKMIP1
ClinVarJAKMIP1
1000_GenomesJAKMIP1 
Exome Variant ServerJAKMIP1
ExAC (Exome Aggregation Consortium)JAKMIP1 (select the gene name)
Genetic variants : HAPMAP152789
Genomic Variants (DGV)JAKMIP1 [DGVbeta]
DECIPHERJAKMIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJAKMIP1 
Mutations
ICGC Data PortalJAKMIP1 
TCGA Data PortalJAKMIP1 
Broad Tumor PortalJAKMIP1
OASIS PortalJAKMIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJAKMIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJAKMIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JAKMIP1
DgiDB (Drug Gene Interaction Database)JAKMIP1
DoCM (Curated mutations)JAKMIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JAKMIP1 (select a term)
intoGenJAKMIP1
Cancer3DJAKMIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611195   
Orphanet
MedgenJAKMIP1
Genetic Testing Registry JAKMIP1
NextProtQ96N16 [Medical]
TSGene152789
GENETestsJAKMIP1
Target ValidationJAKMIP1
Huge Navigator JAKMIP1 [HugePedia]
snp3D : Map Gene to Disease152789
BioCentury BCIQJAKMIP1
ClinGenJAKMIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152789
Chemical/Pharm GKB GenePA143485508
Clinical trialJAKMIP1
Miscellaneous
canSAR (ICR)JAKMIP1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJAKMIP1
EVEXJAKMIP1
GoPubMedJAKMIP1
iHOPJAKMIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:50 CEST 2017

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